Corynebacterium silvaticum: CBE74_07190
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Entry
CBE74_07190 CDS
T07501
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
csil
Corynebacterium silvaticum
Brite
KEGG Orthology (KO) [BR:
csil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csil03019
]
CBE74_07190
Enzymes [BR:
csil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBE74_07190
Messenger RNA biogenesis [BR:
csil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBE74_07190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
DEAD
Helicase_C
AAA_19
AAA_22
nSTAND3
ResIII
AAA_30
HA2_N
AAA_11
NACHT
AAA_16
PhoH
SLFN-g3_helicase
TsaE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ARU47131
UniProt:
A0A7Y4LG38
LinkDB
All DBs
Position
1513111..1517109
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AA seq
1332 aa
AA seq
DB search
MNTAKHQTSNNKNIDTNASSTSHRKQRSSVASPRPHAELRSAKQALRAQLSQVSITEERG
FLRRIHKASSMGAIKAIADDIDQAQATLLQRAAGVPAVTFPENLPVSSQRDAIAEAITNN
QVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAARTVAERIAEELGQKIGDS
VGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFILGYL
KQLLPRRPDLKVIITSATIDPERFAQHFANAHGVPAPIIEVSGCTYPVEILYRPLEVSDG
EKLIDVDPIDGLTQAIQELMGYGPRDILCFFAGEADIREAMDAIEAKRWKNVEVTPLFGR
LSNQEQHRVFSPHSGRRIVLTTNIAETSLTVPGIHFVVDTGTARISRYSTRTKVQRLPIE
PISQASANQRTGRCGRVTDGIAIRLYSQQDFESRPEFTDPEILRTNLASVILRMASLALG
DIENFPFIQAPDTRAIRDGFLLLRELGALTDSDQGDSPKLTTVGRSLAKIPLDPRLARML
IAAEEFGCLREAYIVVAALSIQDIRERPLEKQSQADQLHARFKDTRSDFLSYLKLWEYVS
EKRAELSGNAFRRTMQSEFLHYMRIREWSDLIRQLRSIGEQIGWTNPDDIGGHLDPDNLH
KALLSGSLSHIGLRDGDSKEFIGSRNSRFLVFPGSSLAKRPPQFLMAAELVETSRLWARN
VAEIDPAWVEHIGKNLLKHHYSEPYWSTKRVAAMVHQRSTLYGVPVIADRSVGYASIDLR
AARDMFIREALVNGNWSTHHAFYRRNAEKLLSAAQIEEKIRRRDVVVDEDTLFSFYDSRL
PEHIATGRSFDRWWKTAAQKTPHLLDFDLEELCREGAANVDEQDFPDVWRRGSLEFGLTY
HFDPSAEDDGVTVLVPVPLLGGLDADGFEWLVPGLLEDLVTDLIRSLPKHLRKTVVPAPD
FAHKITTMLSYRDGSLYQRIAECLSELGRPGISADDFNPQALPKHLKITFAAVDKRGRII
DRDKSLESLKSRRSEQIRASVSRVSHAVEQSSAKEWTPQSLGTISQEVTTKVDGQMVTTY
PALVVTPEGVSVKAMATKREADASMFTATLTLLLKAVSVNTQKILNGLPLQQRVAIENYP
HGGATGFVNDARVAVVRDLIIANGGAVRSPEEFSKLQAIIKPLVPSKVRSIVVELAPGIN
SYLRITPEISNWTGPAIDDINNQLNFLLPPHAVSHHGVQHLKHLSRYVQAIMLRLEDMER
MPDRDADRQALLNQLERDLAQKVQKYGHGKSARHVREIQWMIQELRVSLFAQRLGTTQSV
SERKIAKAIEQL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgaatactgcgaaacatcagaccagcaataacaagaacattgataccaacgcgagctca
acttcgcacaggaagcaacggagctcagtagcatctcctcggccacatgccgaattacgc
tcagcaaagcaagcgcttcgcgcacaacttagccaggtcagcattactgaagaacgaggc
tttcttcgtcgtattcacaaggcttcctccatgggcgcaatcaaggctatcgccgatgat
attgatcaagcccaggcgacattattgcaacgggcagcaggcgtccctgctgttaccttc
cccgaaaaccttccggtttctagccagcgcgatgccatcgcagaagctattaccaacaat
caggttgtgattatcgcgggagaaactgggtctggaaaaaccacacagatccctaaaatc
tgtttagagctaggccgcggagtacgcggtttgatcgggcatacgcaaccgcggcgactt
gctgcgcgcacggttgcagaacgcatcgcagaagaactcggccaaaaaatcggcgattcg
gtggggtacgccatccgctttgatgatcgcgtttccgcatccacgtccatcaaattgatg
accgacggcattctgcttgcagagatgcagcgagatcgtttcctcaacgcttacgacaca
ataattatcgacgaagcccacgagcgcagtctcaatatcgactttattctcggctatctc
aaacagcttcttccgcggcgtcctgatcttaaagtcatcattacctctgcgacgattgat
ccagagcggtttgcccagcacttcgctaacgcccatggcgttcctgcgccaatcattgag
gtctccgggtgcacataccccgttgagattctttatcgtcctcttgaagtctccgacggg
gaaaaacttatagacgtcgaccccatcgatgggctcacccaggctattcaggagcttatg
gggtacggccccagagacattctctgtttctttgccggagaggcggatatccgtgaagca
atggatgctatcgaagccaaacgatggaaaaacgttgaggttactcccctctttgggcgc
ctctccaaccaagaacaacatcgggttttctctccccattcaggacgccgaattgttttg
acaacaaacatagcggaaacctcacttactgttcccggcattcattttgtagtggacact
ggaaccgcacgcatttcaaggtattccacccggacaaaagtccagcgtcttcctatcgaa
ccaatttcgcaggcgagcgctaaccagaggacgggtcgctgtggtcgcgtcaccgacggc
atagcaatccggttgtactcccagcaagactttgaatctcgaccagaatttactgatcca
gagatcttgcgaacaaatttggctagcgtcattctccggatggcttctctagcattaggg
gacattgaaaactttccttttattcaagctcccgatacccgagccatccgcgatggcttc
ttattgcttagagaactaggagcactgaccgattccgaccaaggagactcccccaaactc
accacggttggacgaagcctagccaagattcctttggatcctcgcttagctcgaatgctg
attgcagcggaagaatttggttgcctcagagaggcctacatagtggtagccgctctaagc
attcaagatatccgtgagcgtccgttagaaaaacaaagccaggctgaccaacttcacgcc
cgttttaaggacacgcgtagcgattttcttagctaccttaagctctgggaatatgtctca
gaaaagcgcgcagaactgtctggtaatgcttttcgacgtaccatgcaatccgaattttta
cactatatgcgcatcagagaatggtcagatctcattcgtcagttgcgcagcatcggcgaa
caaattggatggaccaacccagatgacattggaggtcacctcgatccagacaacctacac
aaagctctcctctctggatcgctatcccacatcggtttgagagatggagactccaaagag
ttcataggcagcagaaactccagatttttggtgttcccgggttcctccctggccaaacgc
ccaccgcagtttcttatggcagcggaactggtagaaacttcccggttgtgggcacggaat
gtagcggaaatcgaccctgcttgggtcgaacatataggtaaaaatctgctcaaacaccat
tattctgaaccatattggtccacaaaacgtgtggcagccatggtgcaccagagatctacg
ttatatggtgtcccagttattgctgatagatcagtcgggtatgcctctattgatcttcgt
gctgcccgcgatatgttcattcgggaggcgctggtcaacggcaattggagtacgcaccat
gcgttttatcgtcgtaacgcagaaaagctactctctgctgcgcaaattgaagaaaaaatc
cgacgccgcgacgtggtagtcgatgaagataccctctttagtttctacgattccaggctc
cctgagcacatcgccaccgggcgttcctttgaccgctggtggaaaaccgctgcgcagaaa
acgccacaccttctggactttgacctagaggaactctgccgagagggggcagcaaacgtt
gatgagcaagacttccccgatgtatggcgccgaggatctttggaattcggcttaacctat
cactttgatcccagcgccgaagacgacggcgtcaccgtcctcgtacccgtaccgttgcta
ggaggcctcgatgccgatggctttgagtggctagttccaggtttgttagaagatctagtt
accgacctgatccgttccttacccaaacacctgcgtaaaaccgttgttcccgcaccagat
tttgcacataaaatcacgaccatgctgagctatcgcgacggttctctttatcagcgtatc
gccgaatgcttatcggaattgggtcgccctggaatatctgcggatgattttaacccgcaa
gcgcttcccaaacatctcaaaatcacattcgctgctgtggataaacgcggacgtatcatc
gatcgggataaatcgctcgaatcactcaaatcccggcgttctgaacaaatccgggcatca
gtttctcgtgtatcccatgccgttgagcaatcctctgctaaagaatggactccgcagtct
ctaggaactatctcgcaagaagtcaccacaaaagtcgatggtcagatggtcaccacgtac
ccagcgctcgtggtcacgccggaaggtgtttccgtcaaggctatggccactaaacgtgaa
gctgacgcctccatgtttaccgcgaccctcaccctgcttcttaaagcggtgtccgtgaat
actcaaaaaatactcaatggactgccgcttcagcaacgagttgcgatagaaaattatccg
catggtggcgccacgggctttgtcaacgacgcgcgagttgcagtcgttcgagatttgatc
attgctaacggtggcgcggtgagatcaccagaagaattctccaagctgcaagcgattatt
aaaccgttagttcctagcaaggtgcgttcaatagttgtcgagttagcccccggcattaac
tcgtatctccgcatcacaccagagatcagcaattggacaggcccggctatcgacgacatc
aataatcagctcaattttctacttccgccgcatgctgtatcccaccacggggtacagcat
ctcaagcatctttcgagatatgtacaagcaatcatgctccggcttgaagacatggaacgg
atgcctgaccgagatgcggataggcaagcgctgcttaatcaactagaacgagacttagct
cagaaagtccaaaaatacggacatggaaaatctgctcgtcatgtacgcgagattcagtgg
atgattcaagaattgcgtgtcagcctttttgcccaacgattaggaactacgcaatcggtc
tctgagagaaagatcgccaaggcaatcgaacaactctaa
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