Corynebacterium silvaticum: CBE74_09070
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Entry
CBE74_09070 CDS
T07501
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
csil
Corynebacterium silvaticum
Pathway
csil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBE74_09070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csil03019
]
CBE74_09070
03009 Ribosome biogenesis [BR:
csil03009
]
CBE74_09070
Enzymes [BR:
csil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CBE74_09070
Messenger RNA biogenesis [BR:
csil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBE74_09070
Ribosome biogenesis [BR:
csil03009
]
Prokaryotic type
rRNA processing factors
CBE74_09070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
TruB_N
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
ARU46592
UniProt:
A0A7Y4UPP3
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All DBs
Position
complement(1926188..1929571)
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AA seq
1127 aa
AA seq
DB search
MAEGTTKKAPARRATRKTAEKPAAPEVTAVPIDHDAIGERIRVHALAKLVSVSSRELIAT
LATLGLTKVAQSTLTREEAFKLLDAHHIDTYSAEEKLRHRVEKNVENEIHQIEEKVEREL
NPDAEVAKLDDPEESEKLRRRIEKNVENEIHQIEEKVERELQDRESAQAEATSEAPADIA
VEDLVVVVTEDEVAELLADIEPEITPAPALGQAAPAFPTPLFIAPTPAEELENHTDETIE
DDEESAQSRRRRRGRRGTGRGKKTEIEGVSAAEDCEESLDGEDTDVEESEELITEPVAIK
GSTRLEAQRRRRAEMREESRNKRHIVSEAEFLARRESVKRTMIVRERERSDHPGAVTQVG
VLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWRA
AGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPNGRSAGISR
KLPATERKRLKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWNQIQELTEKEK
NSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSVAPELSDRLIK
FDRAAHDGRDAFEAHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGG
NLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLSENQDLVLRRLTEALGRDRTR
HQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQGVSDAAIEKSSR
VRSGRNNAARDHGVAHQDPAQHPAAVAMHHHEENTSDADNRTSIDDLAAAVVIDDAELEK
VVEAVSGGAEEAAPAESAKEKKGRRRRRGLRNAKRKDKGATDDVMGIVDAALDRAFEEDP
DEPSGADHLPLADNKLSRSTTAVTYEEALAAFEASPRRKRAVRGNSTSDHAPKPEDFKRI
DATVDADVEAHADEDSEETPSDSRRRSRRVARKRNDARKVVETETAEQPDVVDDADSTDD
TVKADSPRGRRGRRRAVRKKLQEASLDHSASSAAVEESPASARRRRRAVRKSVGKSPVKA
PRKSVIGEESSGVYVKGETGLDTGDASSAGRGRRRVTRRVTTAAKRN
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaggaaccacaaaaaaggcgcctgcgcgccgagcaacacgaaagaccgctgag
aagcctgcggcaccggaggttacggcggtacctattgatcatgatgcgatcggtgagcgg
attagggtacatgcgctcgctaaattagtgtcggtgagttcgcgcgagctcatcgctacg
cttgccacgctagggctgaccaaggtcgcgcagtcgacgctgactcgcgaagaagccttc
aagcttctcgacgcccaccacattgacacctactcggctgaagaaaagctgcgtcatcgg
gtggagaagaacgtggaaaatgagattcatcagatcgaggaaaaggtcgagcgcgagctt
aaccccgacgctgaggtcgccaagctggatgatccggaagaatccgagaaactgcgccgg
cgaatagaaaagaacgtggaaaatgagattcatcagatcgaggaaaaggtcgagcgcgag
ctgcaagaccgagagtctgcgcaagcagaggctacctcggaggctccagcagatatagca
gtagaagatctggttgtggtggttaccgaggacgaggtagcggagcttcttgcggatatt
gagccagagattacgcctgctcccgcgttggggcaggctgcccctgctttccccacgccg
ctgttcatcgcgcctactcctgcagaagagctggaaaaccacacggatgagaccatagaa
gacgatgaggaatctgcacagtctcgccgtcgccgccgcggtcgccggggtactgggagg
ggaaagaagactgagatcgagggcgtttccgcagccgaggactgtgaagaatcgctggac
ggcgaggatacagacgttgaagagtctgaggagcttatcaccgaaccggtagcgatcaag
gggtctacccgccttgaggcgcagcgtcgccgccgcgcggagatgcgagaggaatcgcgc
aataagcgccacatcgtttctgaggcggagttcttggcgcgccgggaatctgtaaaacgc
accatgattgtgcgtgagcgtgagcgtagcgaccacccaggagctgtgacccaggtgggg
gttttggaagacgatctgctcgttgagcactttgttaccagcgatacgcagtcgtcaatg
attggcaacatatatttgggacgcgtccaaaatgtgctgccgagcatggaagccgcgttt
atcgatatcggaaaaggccgcaatggcgttctctacgcgggcgaggtggattggcgtgct
gccggcttgggcggtcgggggcgtcgcattgagcaggccctaaaatctggcgatcaggtg
cttgtacaggtgtccaaggatcctgcagggcacaagggtgcgcgactgaccacccaaatt
tccttcgcggggcgctatttggtgtacgtgcctaacgggcgtagcgcgggtatttctcgc
aagcttcctgccacagagcgcaagcggttgaagaacatcctcaaagaggtggttcctaaa
gacggcggagctatcatccgcactgctgcggagaacgtttctgcggaggctattgctgcg
gatgtgaaccgactgcacaagctgtggaaccagattcaggagctcacggagaaagagaag
aactccaagggcgctaagccagtcaccatgtatgaagagcccaacatgttggtgaaggta
gtgcgcgatcttttcaacgaggacttctcggagctgattgtcgacggcgaccgcgcatgg
aataccgttcacgcttatattcagtcggtggcccctgagttgagtgatcgcctgatcaag
tttgaccgtgcggcgcacgatggacgcgatgcgtttgaagcacaccgcgtagacgaacag
ctgcataaggcgctatcgcggaaggtatggcttccttctggcggaaccttggtgatcgat
cgcacggaagcgatgactgtcatcgatgtgaacaccggaaaattcaccggtgctggcggg
aacctcgaagaaaccgtaactcgtaataatcttgaggctgcggaggaaatcgtcaggcag
atgcggttgcgcgatcttggcggcatgatcgtcgtggacttcatcgacatggtgctttca
gaaaatcaggatctggtgctgcgccgactcaccgaggcgctggggcgtgaccggacgcgt
caccaaatttctgaggtgacgtcgttaggccttgtacaaatgactcgcaagcgtcttggc
acgggcttgctggagacttttgccacggagtgtgagcattgcgagggccgtggcgttatc
atccacgatgacccggtggagcaaggcgtttcggatgctgccattgagaaatcctcacgt
gtgcgttccggaaggaataatgcggctcgtgaccatggggttgctcaccaagatccggca
cagcatcctgcagccgtagcgatgcaccaccacgaggagaacacttctgacgctgataac
cgcaccagtatcgatgaccttgcagctgctgttgtgattgatgacgcagagctggagaag
gtcgtagaggccgtgtcgggtggcgccgaggaagctgcgccggcggagtccgccaaagag
aagaagggacgcaggcggcgccgtggcttgcgtaacgccaagcgcaaggacaagggtgca
acagacgatgttatgggcattgtcgacgcagctttggacagggcttttgaggaagacccg
gacgagccctcgggtgctgatcatctgccgctggcggacaacaagctcagccgcagcacc
accgctgttacgtacgaggaagcgctggcagcgtttgaagcttcgccacggagaaagcgc
gcggtgcgcggaaactccacatcggatcatgcgccgaagccagaggactttaagcgtatc
gacgccaccgtggacgccgacgtagaagcgcatgcggatgaagactctgaggaaacccct
tcggatagccgccgtcgctcacgtcgcgttgctaggaagcgtaacgacgctcggaaggtt
gtggaaactgaaactgcagagcaaccagacgttgtggatgacgctgactcgacggacgac
accgtgaaggcagattccccacgggggaggcgtgggcgccgacgtgccgtgcgcaagaag
ctccaggaagcaagcctcgaccactcggctagcagtgctgcggtagaagagtcacctgcg
agcgcccggcggcgtcggcgcgcagtgcgtaaatccgtggggaaatccccggtgaaagca
ccacgcaagtctgtgatcggtgaggaatcttccggcgtatatgtgaaaggtgagacggga
ctagacacgggtgacgcatcatctgcgggtcggggacgtcgacgcgtgacgcgtcgggtg
accacggcggcaaagagaaactaa
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