Camellia sinensis (tea plant): 114256550
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Entry
114256550 CDS
T07364
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114256550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114256550
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114256550
mRNA degradation factors
5'-3' decay
Decapping complex
114256550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
114256550
NCBI-ProteinID:
XP_028052015
LinkDB
All DBs
Position
Unknown
AA seq
801 aa
AA seq
DB search
MLPSPENALFNASQYAFFGQEAVEEVELGGLEDDIPVIGYGDDEYHLFDKEEGSGIGSLS
DIDDLTSTFSKLNKVVTGPRHPGVIGDRGSGSISRESSSAAEWSQEADFPDWLDPHIYDT
QSSQEGKRWSSQPHNSVRIAETKPLYRTSSYPLQQQQQQQQQQHFSSEPILVPKSSFCFF
PPPGGRSQQASPRNQSHHLNIFSHTGGHQLPFSAPNFSPLSSSNLHLAGLPHGLHYGGNM
AQLDPSGLSINSRSQNHWANHAGMFHGDHSNHLNNISQQQFSYQKGLLSSQLLPSQQQLQ
QQRMHLPVQPSLAHFSAMQSQVFNALTSSPAHLSKYGLVDMRDQRLKSSQRGRQNIRLSQ
QGSDTSNQKTDSGCPQFRSKYMTSEEIESILRMQHAVTHGNDPYVDDYYHQARLAKKASE
LGSKHRFCPIHPKELTSRSRNSADSLPHLQVDALGRVSFSSIRRPRPLLEVDPPSSASGN
GSAEQVSEKPLEQEPMLAARITIEDGICLLLDIDDIDRLLQFSQPQDGGTQLRRRRQILL
EGLAASLQLVDPLGKSSSVGLAPKDDIVFLRLVSLAKGRKLLSRYLKLLFPGGELARIVC
MAIFRHLRFLFGGLPAXSGAAETITNLVKIVSTCVNGMDLNALSACLAAVVCSAEQPPLR
PLGSPAGDGASVILISVLERATKLLTDPRAASNCSIPNPALWQASFDAFFGLLTKYCVSK
YDSLVQSIYMHGQPSSEIIDSETTRAISKEMPVELLRASLPHTDEQQRKLLLDFAQQSMP
ITGFNANGGSGGQVTPKSVKG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgcttccttcaccagaaaatgcactctttaatgcatcacagtatgcattttttggtcaa
gaagctgtggaggaagttgagttggggggtttggaagatgacattccagttattgggtat
ggtgatgatgagtaccatctctttgataaggaagagggatcaggcattggatccttatct
gatattgatgatctgacaagtacattttcaaagttgaacaaagttgttactggaccaaga
catcctggtgtaattggtgatcgaggatctggatcaatttcgagggaaagttcatctgcg
gctgaatggtcacaggaggcagatttccctgactggttagatccgcatatatatgacaca
caaagttcccaagaaggcaaacgatggtcatcacagccacataattcagtgcgtattgca
gaaacaaaacccttgtacagaacatcgtcatatcctctgcagcaacaacagcagcaacaa
cagcagcaacacttttccagcgaacctattttggtacccaaatcatctttttgctttttc
cctccacctggtggcagatctcaacaggcttcaccacgcaaccaatcacatcacctaaat
attttttctcataccggaggtcatcagttacccttttctgctccaaacttttctccttta
tctagctctaatctacatttggccggcttacctcatgggttgcattatggtggaaatatg
gctcagttggacccttctggtctttctattaacagccgatcacaaaaccactgggccaac
catgctggcatgtttcatggggaccattccaatcacttaaacaacatttcgcaacaacaa
ttctcttaccagaaagggttattatcttcacagttacttccatcacagcagcagctgcaa
cagcaaaggatgcatcttccagttcaaccatctttagcccatttctcagcaatgcaatcc
caagtatttaatgcccttacttcttcgcccgcacatttgagtaaatatgggttggtggat
atgagagatcaaagacttaaatcatcacaaagaggtagacagaatatccgtctctctcaa
caaggttctgatactagtaaccagaagactgatagtggttgccctcagttcagatcgaag
tatatgacatctgaggagatagagagtattcttagaatgcagcatgctgtcacacatgga
aatgatccatatgtagatgattattatcaccaagctcgtcttgcaaaaaaagcttctgaa
ttgggatcaaaacatcgtttctgcccaatccatccaaaagagcttacttctcgatctcgt
aatagtgcagactcacttccacatctccaagttgatgcacttgggagggtctccttctct
tcaatacgtaggccacgtcctctcctagaagttgaccctccttcctctgcttctggcaat
ggcagtgctgagcaagtttctgaaaagccattagaacaggaaccaatgcttgcagctaga
atcaccatcgaagatggaatttgtcttcttcttgacatagacgacattgaccggctccta
caatttagtcagccacaagatggtggaactcagcttaggcggaggcgacagatcctgttg
gaaggcttggctgcctcacttcagcttgttgacccacttggaaaaagttcctcagttggg
ttggcccccaaagatgacattgtgttcctacgattagtttctcttgcaaagggtcgcaag
ctcctttctaggtaccttaaacttctcttccccggcggagagcttgcccgaatagtttgc
atggctatcttccgtcatttgaggtttttgtttggtggtcttcctgcannttcaggggca
gctgagacgattactaatcttgtgaagatagtttcgacgtgtgttaatgggatggatctt
aatgcgcttagtgcttgtcttgctgcggtagtttgttcagcggagcaaccaccactccgt
ccccttggaagccctgctggggatggggcctcggttattttaatatctgttctcgaaagg
gcaaccaaactgttgactgatcctcgtgctgctagtaactgtagcatacccaaccctgcc
ctttggcaggcctcgtttgatgcgttctttggtctcctgaccaagtattgtgttagtaaa
tatgatagtttagtgcaatcgatatacatgcacggccagccgagcagtgagattattgat
tctgagaccacgagagccataagcaaggaaatgcctgtcgaacttctacgtgcaagtctt
ccacacactgacgagcaacagaggaagctgttattagattttgctcaacaatccatgcct
atcaccggatttaatgcaaatggaggaagcggtggtcaagtaactcctaaatcagtgaag
ggctag
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