Camellia sinensis (tea plant): 114256649
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Entry
114256649 CDS
T07364
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114256649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114256649
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114256649
Spliceosome [BR:
csin03041
]
Complex C
Other components
Step II factors
114256649
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA
AAA_30
Cas3-like_C_2
nSTAND3
Sigma54_activ_2
AAA_16
GIPC1_GH2
ABC_tran
TsaE
nSTAND_NTPase5
PhoH
Motif
Other DBs
NCBI-GeneID:
114256649
NCBI-ProteinID:
XP_028052105
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MALETKEDGLKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEMGRNCETVEEFDSMLKE
NGAEMPDYFVRTLLTIIHAILPPKSKSKSAKDSKKDGSEGMKSSFPGLSIEDSRARVKEL
EREIEIETREHRGDGEEEEIRKRRDRDRERDRGHRDRRERHRGERERYDRSGRGERHKDG
DEEDRVRGRHRDRHERHRRDGYEEDGDNREVDDDRRDRRDGGYYSNEPELYQVYKGRVSR
VMDTGCFVQLNDFRGKEGLVHVSQMANRRIGNAKDVVKRDQEVYVKVISMSGQKLSLSMR
DVDQDTGKDLLPLKKSSDNDPFRTNPSGSNNGGPMTRTGLSGIRITEEDDTVPSRRPLKR
MSSPEKWEAKQLIAAGVLDARENPMYNEDGDGLLYQEEGAEEELEIELNEDEPAFLQGQS
RYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPM
PETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRRSLPIFKLKNEL
IQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEF
GCRLGEEVGYTIRFENCTGPDTVIKYMTDGMLLIEILIDENLSQYSIIMLDEAHERTIHT
DVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTYPVEILYTKQPES
DYLDASLITVLQIHLTEPEGDILLFLTGQEEIDHACQCLYERMKGLGKNVPELIILPVYS
ALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSL
VITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSPTSIPEIQRINLGMTTLTMKA
MGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLL
ASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKA
KNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFH
AARKDPQEGYRTLVENQPVYIHPSSSLFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLV
ELAPRFFKVADPTKMSKRKRQERVEPLYDRYHEPNSWRLSKRRA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggctttggagaccaaagaagatggtttgaagaaactagagtacctttcattggtctcc
aaggtttgtacagagctcgagtcccacttagggtttggggacaaggttttggccgaattc
attaccgagatgggaaggaactgcgagactgttgaggaattcgattcgatgctcaaggag
aacggtgctgaaatgcctgattacttcgtccgcactcttttaactataattcacgctatt
ttgcctccgaaatccaagtccaaatcggccaaagattcgaagaaagatgggtctgaaggt
atgaaatcgagttttccgggtctttcgattgaggatagtagagcgagagtgaaggaattg
gagagagagattgagattgaaacgagggaacatcgaggagatggggaagaagaagagatt
agaaaacgtagggacagagacagagaaagggatagaggtcatagagataggagagagagg
cataggggggagagagagagatatgataggagtggtagaggtgaacggcacaaagacggg
gatgaagaggatagagttaggggaaggcatagggatagacatgaaaggcataggagagat
gggtatgaagaagatggggataacagggaggttgatgatgataggagggaccgaagagat
ggtgggtattactccaatgagcctgaattgtatcaggtttataagggaagagtgtcaaga
gtgatggatacaggttgctttgttcagctcaatgattttaggggcaaagagggcctggtc
catgtttcgcagatggcgaatcgaaggattggtaacgctaaggatgttgtaaaacgggat
caggaggtttatgtgaaagtgatatcaatgtcgggacaaaagttgagtctttcaatgcgg
gatgttgatcaggatactggtaaagatctgcttccattgaagaagagctcagataatgac
ccttttcggactaacccttctggatcaaacaatggggggcctatgactaggactggtctt
tcagggattagaattactgaagaggatgatactgtcccatcacggcgaccattgaagaga
atgagttcaccggagaaatgggaagctaagcagctgatcgctgcaggtgttctggatgct
agggagaatcccatgtataatgaagatggagatgggttgctctatcaagaagagggtgct
gaggaagagcttgaaattgagctaaatgaagatgaaccagccttcttgcaaggacagagc
cgatactctatggatatgtcacctgttaagatttttaagaatccagaagggtcattgagt
cgtgcagcagcccttcaatctgctctcataaaggagcggagagaagtaagggaacagcag
cagagaacaatgctcgactctatcccaaaagatcttaatcgtccgtgggaagacccaatg
ccagaaacaggtgagaggcatcttgcacaagagcttaggggggttggtttatcagcctat
gacatgcctgagtggaaaaaggatgctttcgggaaagccctgacttttgggcagagatca
aagctctccatccaggagcagaggcggagcttgcctattttcaaattgaagaatgaattg
attcaggctgttcatgacaatcaggttctggtggtgattggtgagaccggttcaggcaag
acaacacaggtgactcagtatctagctgaagcagggtacacgaccaagggcaagattggc
tgtactcagccccgtcgagtggctgcaatgtcagtggccaagagggttgctgaagagttt
ggctgccgattaggagaggaagttgggtacaccattcgttttgagaattgtactggacct
gatacagtaatcaagtatatgaccgatggtatgcttctgatagagattttgattgatgag
aatttatctcagtattcaattataatgcttgatgaagctcatgagaggacaatccacact
gatgtcctttttggactgttgaaacagcttgtaaagaggagacctgaccttcgattgatt
gtcacatctgccacattagatgcagagaaattttcgggttatttctttaactgcaatatc
tttacaattcctggaaggacttatccggtggagatactctacaccaagcagccagaaagt
gactacctagatgcatctctaatcactgttctacagatccacttgacagaacctgagggt
gatatcctcctcttcttgactggtcaagaggagattgatcacgcgtgccaatgcctttat
gagaggatgaaaggtttagggaaaaatgttcccgaattaattattttaccagtctatagt
gcacttccgagtgaaatgcaatccaggatctttgaccctgctcctccagggaagaggaaa
gtggttgtagcaaccaatatcgcagaagcatccttgaccattgacggaatatattatgtg
atcgaccctgggtttgctaagcaaaatgtttacaatcctaaacaagggcttgattcactt
gtcataacaccgatttcacaagcatcagctaagcaacgagctgggcgtgctggacgaact
ggaccaggaaaatgttaccgcctttacaccgaaagcgcatttcataacgaaatgtcgccc
acctcaattccagaaatccaaaggataaatcttggaatgactacacttactatgaaagct
atgggaataaatgatctcctatcttttgatttcatggacccaccttctcctcaagctctc
atttctgccatggaacagttgtacagtctaggagctctggatgaggaggggcttctgacc
aaattgggtaggaaaatggcagaatttccactggatccaccgttgtctaagatgctactt
gccagtgtagatcttggatgtagtgatgagattttaaccattattgcaatgattcagact
ggaaacatcttctacaggcccagggagaagcaagcccaagctgatcaaaaaagagccaag
tttttccagcctgagggagaccatctgactttacttgctgtttatgaggcttggaaggcc
aagaatttttcgggtccatggtgttttgagaactttgttcagtcccgatctttgaggaga
gcacaggatgtccggaaacagcttctcactattatggacaagtataaattggacgttgtt
agtgctgggaaaaatttcaccaagattaggaaagccatcacagctgggtttttctttcac
gcagcaagaaaggatccacaagagggttacagaacactggtcgaaaaccagcccgtttac
atacatccgagcagttctctttttcagagacagccagactgggtcatctaccacgagctg
gtaatgacaacaaaggagtacatgcgagaggtcacagttgtcgaccctaaatggcttgtg
gaactagcaccgagattcttcaaagtagcagaccccacaaaaatgagcaagcgcaagcgt
caagaacgcgttgaaccgctttatgatagataccatgaacccaattcttggcgtttgagt
aaaaggcgggcttga
DBGET
integrated database retrieval system
