Camellia sinensis (tea plant): 114258608
Help
Entry
114258608 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114258608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114258608
03012 Translation factors [BR:
csin03012
]
114258608
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114258608
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114258608
Translation factors [BR:
csin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114258608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
AAA_22
nSTAND3
Ank_5
HA2_N
ATPase
AAA_23
AAA_19
ResIII
Ank_2
AAA_16
AAA_25
Ank
ABC_tran
Rad17
AAA_7
Myosin_head
DASH_Duo1
NACHT
Motif
Other DBs
NCBI-GeneID:
114258608
NCBI-ProteinID:
XP_028054389
LinkDB
All DBs
Position
Unknown
AA seq
1228 aa
AA seq
DB search
MMKLQVAPSSYSQKKKKQKSGGGQQQEQNPNVAESTRIRISQIIDQFLSTNDDMYAFEPN
LTNAERAVVHELCRKLGLKSRSKGNGNKRHVCVHKIKKNGFTKDGKENCSSFTFSEDAKE
VLQDLFTQYPPDDRDLGEETIGKHGGKTEKIREKRDDIFCKPSMNKAEIGRKVESFASKL
EKSQELRQITEGRAKLPIASFRDVIMSTIESNQVVLISGETGCGKTTQVPQFLLDYMWGK
GEACKIVCTQPRRISATSVAERISRERGENVGDSVGYKIRLETKGGKNSSVVFCTNGVLL
RVLVSKGTERLKAESSKRLAKDAVSDLTHIIVDEIHERDRYSDFMLAILRDMLPSYPQLR
LVLMSATLDAERFSQYFGGSPIIRVPGFTYPVKTFFLEDVLTILKATENNHLDCASEDAM
VDEFELGEEYKIALDEAINLAWLNDEFDTLRDLVSSERTPKVFNYQHSSSGVTPLMVFAK
KGKVGDVCMLLSFGADCHLQDSDGITAPEWAERESQGEASEIIKKHMEKVHSNCEEDQEL
LDKYLSTSNPELVDVALIEKLLRKICMDSKDGAILVFLPGWDDINKMREKLLASPFFKDC
SKFLIISLHSMVPSAEQRKVFRRPPLGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKS
YDPYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAAWMPDFQIPEIKRMPI
EELCLQAKLIDPNCNIENFLRKTLDPPVFETIRNAIIVLQDIGALSHEGEQLTDLGEKLG
SLPVHPLICKMLFFGILLNCLNPALTLACASDYRDPFILPMLPNDKKKAAAAKSHLASMF
GGNSDQLAVVAAFECWMNAKKKGQEARFCSQYFVSSSTMNMLFGMRKQLQNELLRHGFLP
EDVSNCSLNERNPGILHAVLVSGLYPMVARLLPPFKNTNRSMVETASGEKVRLHPHSSNF
KLSFTKSSDQPLIIFDEITRGDGGMHIRNCSVVGPLPLLLLATEMVVVPIKDIDDDDDDN
NNESDYEDADEDESDDYKIEMHNKLGEDYEEKVMSSPDNAVKVVVDRWLSFKSIALDVAQ
IYCLRERLSAAILLKVTHPRKVLSPLLEASLNAIASVLSYDGMSKISSPTEPVDSLTSMV
NATEIDQSTHGKVKGMVQNSNGFLRSMPQAYRGTMSWNGPLSSHVQYPIASTHIKPYPRF
APQGPSGAISGPIALRGDSSKRQRGNWS
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaattacaagtcgcaccatcttcatattcacagaagaagaagaaacaaaagagc
ggaggcggccaacaacaagaacaaaaccctaatgttgctgaatccactcgcattcgtata
tcccaaatcatcgaccagtttctttctacaaatgatgatatgtatgctttcgaacccaac
cttacaaatgctgaacgtgctgtggtgcatgaattatgtaggaagctgggtctgaagtcc
agaagtaaagggaatgggaataaacggcatgtttgtgtgcacaaaattaaaaagaatggc
ttcaccaaggatgggaaggaaaattgcagttcttttacattttcggaagatgcaaaagag
gttttacaggacttatttactcaatatcctcctgatgatcgagatttgggtgaggaaact
attgggaaacatggtggaaaaactgaaaaaatacgagaaaaaagagatgatattttttgc
aaaccctctatgaacaaggccgaaatcgggagaaaggtggaatcatttgcttctaagtta
gaaaaatcccaagagttaagacagattactgaagggagagctaagctcccaattgcatcg
ttcagggatgtgattatgtcaacaatagaatctaatcaggtagtgcttatatctggcgag
actggatgtggaaaaacaacacaggtcccgcagtttcttttggattacatgtggggcaag
ggtgaggcatgcaaaatagtctgcactcaaccacggcgaatctcagcaacatcagttgct
gaaagaatctctcgtgaaagaggcgaaaatgttggagatagtgtgggatataagatacgt
ttggagaccaaaggtgggaagaactcatccgttgtgttttgcactaatggggttctgttg
agggtgctggtttctaaaggcactgaaaggttgaaagcagaatcttcaaaaagactggca
aaggatgctgtttctgacttaactcacattattgtggatgaaattcatgagagggatcgc
tactccgatttcatgctagcaattctcagagacatgcttccttcatatcctcaattacgt
ctggttctaatgagtgctacacttgatgctgaacgattttcacaatattttggtggatcc
ccaattatccgagtccctgggttcacttatcctgtcaaaactttcttcttggaggatgta
cttacaattctgaaagcaacagagaataatcaccttgattgtgcttcagaagatgccatg
gtcgatgagtttgagttgggagaggaatacaagattgcccttgacgaggctattaattta
gcatggttgaatgatgagtttgataccctccgagatttggtctcttctgaaagaactccg
aaagtttttaattaccagcattcatcgagtggagtaacaccactaatggtgtttgcaaaa
aaaggcaaagtgggtgatgtttgcatgctcctctcttttggtgcagactgccatttacaa
gacagtgatggaattactgcaccagagtgggctgaacgggagagtcagggagaagcttct
gaaattattaaaaaacacatggaaaaagtccattccaactgtgaggaagatcaagaatta
ctcgataaatatttatccactagcaatcctgagcttgttgatgttgcccttatagagaag
ttattgagaaagatttgtatggattcgaaggatggagctatccttgttttccttcctggg
tgggatgatataaataaaatgagagagaaattacttgctagcccctttttcaaggactgt
tcaaagtttttgataatatctcttcactccatggtcccatctgcggagcaaaggaaggtt
ttcagacgcccccctctgggttgccgtaaaattgttctttcaactaacatcgctgagact
gctatcactattgatgatgttgtttatgttatagacagtggacggatgaaggaaaaaagt
tatgacccctacaataatgtatcaactcttcagtcttcttgggtttcaaaagcaagtgca
aagcaaagagagggacgtgcaggacgctgccaaccaggaatctgttatcacctttattca
aaacttcgtgccgcttggatgcctgatttccaaataccagaaattaagaggatgccaatt
gaggaactttgtttgcaggcaaaactgattgatccaaattgcaatatagaaaattttcta
cgcaaaacattggaccctccagtttttgaaactatacgtaatgcaattattgttcttcaa
gatatcggggccttgtcacatgagggagaacaacttacagaccttggggagaagcttggt
tctctaccagttcatccattaatttgcaagatgcttttctttggcatattattgaactgc
cttaatccagccttgactttggcctgtgcctctgactatagagatccatttattcttccc
atgttgccaaatgacaaaaagaaagctgcagctgctaaatctcatctggcttcaatgttt
ggtggaaatagcgaccaactagcagtggtagctgcatttgagtgctggatgaatgccaag
aaaaagggccaagaagcccggttttgttctcaatattttgtgtcctccagcaccatgaat
atgctgtttggaatgcgtaagcaactccaaaatgaattactccgacatgggttccttcca
gaagatgtgtcaaattgtagcttgaatgaacgcaatccaggtatactccacgccgtcctt
gtttctggtttgtatccaatggtggcaagattgcttccacctttcaagaatacaaaccgg
tccatggtagagactgctagtggagagaaagtacgattgcatcctcattcctccaacttt
aagttatcatttacgaaatctagtgaccaacctctgatcatatttgatgagataacccgc
ggagatggaggtatgcacatcaggaactgtagtgttgttgggcctctcccattgttattg
ctggcaacagagatggtagtggttcctattaaggatattgatgatgatgatgatgacaat
aacaatgagagtgactatgaagatgctgatgaagatgaaagtgatgactacaaaatcgaa
atgcataataagttgggtgaagattatgaagagaaggttatgtcttctcctgacaatgca
gttaaggtcgttgttgaccggtggctttctttcaaatcaatagcccttgatgttgctcaa
atatactgccttagagagagactatctgcagcaatccttctcaaagtgacacatccacgg
aaagttctttctccacttctagaggcttctctgaatgcaatagcctctgtcttatcttat
gatgggatgtcaaagatctcatcaccaacggaacctgtggactcgctgacttcaatggtg
aatgcaactgaaatagaccaatccacacatgggaaggtgaaagggatggttcagaattca
aatggttttctgagatctatgccacaagcatacaggggtacaatgagctggaatggccca
ttaagcagtcatgtccagtatcctattgcttcaacacacataaaaccatatccgaggttt
gcaccacaaggtcccagtggagccatatcaggaccaattgctttgaggggggattcttcc
aagcggcagcgtggtaattggtcttga
DBGET
integrated database retrieval system
