KEGG   Camellia sinensis (tea plant): 114259437
Entry
114259437         CDS       T07364                                 
Name
(RefSeq) DNA repair protein RAD4
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    114259437
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csin03400]
    114259437
DNA repair and recombination proteins [BR:csin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      114259437
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 Transglut_core
Other DBs
NCBI-GeneID: 114259437
NCBI-ProteinID: XP_028055256
LinkDB
Position
Unknown
AA seq 1048 aa
MHTLTWSTTVSINRPCFYTPSQPRLSVETVRSSGWTGTPSLPFPALVVSSIDRSNLEKAM
RTRNQSKRHNQSTGEQVMEPVEGSNSLESLNEDGTLTAISHEAVGKLLKRVNARGLSALK
KQDNYLRQCDLASKSESLSEKTDEHGVAKRNKENALDGAGCSSDAIQSTPSKDTVEGKAF
HHTNPDSEEELDESFWEDGSLHILNSVNNFQKDLVNGVTIEFEGTPDSGKRKTIRRASAE
DKELAELVHKVHLLCLLGRGRLIDNACNDPLIQASLLSLLPKHLLRISEVTKLTVNALAP
LVSWFHNNFHIRSPSSTERSFHSALAFALETREGTAEEVAALSVALFRALNLTTRFVSIL
DVASLKPDTDKSESVRNDASKAGKGIFHSSTLMVARPNQVSISPVKQSSSDDKGNICETS
SRGACRAKNSKSSRNSSQSKDTPIADQSTLASEEPNELSDMCLTKKSKEESKRKGDLEFE
MQLEMALSTTAVGTSRSSMILDANDIHNNSENLSSPAKRMKTIKTVESPSSQGISTAFGS
RKVGAPLYWAEVYCSGENLTGKWVHVDAVNAIIDGEQKVEPAAAACKTSLRYAVAFAGLG
AKDVTRRYCMKWYKIASQRVDPIWWGTILAPLKELESGATGGVIHLEQDDSNGQEKVGAF
KISDSLGQNCILADAAILPGQLAMEVPKEACKKLGAESPARNPIIASRSSLEDMDLETRA
LTEPLPTNQQAYKTHHLYALERWLNKYQILHPKGPILGFCSGHPVYPRTCVQILHTKQRW
LREGLQVKANELPAKVLKRSLKLSKAQTSEADDHGEEGCEGNIVLYGKWQTEPLCLPHAV
NGIVPKNERGQVDVWSEKCLPPGTVHLRLPRVAPVAKRLDIDFAPAMVGFEFRNGRSLPV
FEGIVVCAEFKDAVLEAYAEEEERREAEEKKRSEAQAILRWYQLLSSIVTRQRLNNCYGD
GLASQTCNDIPQTNDKVSAQVGCSEDDRHSPGCLELNVLDRKLDVKSMVPTEEEHEHAFL
TDDQAFDEESFTRTKRCRCGFSIQVEEM
NT seq 3147 nt   +upstreamnt  +downstreamnt
atgcatacattaacttggagcaccactgtttccataaacaggccctgtttttacactcca
tcacagcccaggctatcggtcgagaccgtacgctcttcggggtggaccggtacaccttcc
cttcccttcccggctctcgtggtctcttccatcgatcgatcaaacttggaaaaggctatg
cgaaccagaaaccaatccaagcgacacaaccaatccactggtgaacaagtgatggaacca
gtggaaggctcaaactctttggaatctcttaatgaagatggcactcttactgccatatca
catgaggctgtaggaaagcttttaaaacgagtgaatgcacgtggcttgtcagctttgaag
aaacaagataactatctccgtcagtgtgatcttgcaagcaaatcggaaagtctgtctgag
aagactgatgaacatggtgtagcaaagaggaataaagaaaatgccttagatggtgcaggt
tgtagtagtgatgcaatacaaagcactccatcgaaagacacggttgaagggaaagcattc
catcacactaatcctgatagtgaagaagaattggacgagtcattttgggaagatggttct
cttcatattttgaattctgtaaacaattttcaaaaagacttagttaatggagtgactata
gaatttgaggggaccccagattctggtaaacggaagactattcgtcgagcttctgctgaa
gataaggaattggccgagcttgtgcacaaggtgcatttactttgtttacttggacgagga
aggttgattgacaatgcttgtaatgatcctctcattcaggcttccttactttcacttcta
ccaaaacacttgctgaggatatcagaggtcacaaaattgacagttaatgcactggctcca
cttgtcagttggtttcacaataatttccatattagaagtccaagcagtacagagagatca
tttcattcagctttggcatttgcgctcgagactcgtgaagggactgcagaggaggttgct
gcattgtctgtggcgctatttagagctctgaaccttacaacccggtttgtgtccattttg
gatgtggcctccttgaaacctgatactgacaaatctgaatctgttagaaacgatgcaagc
aaagcaggtaagggcatatttcactcttccacactgatggtggctagaccaaatcaggtt
tctatttctcccgtgaaacaatcatcatcagatgacaagggcaacatctgtgaaacttcc
tcaaggggtgcatgcagagctaagaatagcaagtcatcaagaaattcctctcaatccaaa
gatactccaattgctgatcagtctacgttagcttcggaggaaccaaatgaattatctgat
atgtgcctgaccaagaaatcaaaagaggaatccaagagaaaaggggatcttgagtttgag
atgcagttggaaatggctctttctaccacagcagttgggacttctagaagcagtatgatc
ttggatgcaaatgacattcataataattcagaaaatctctcgtctcctgctaaaagaatg
aaaacaattaaaacggtagaatctccgtcttctcagggaatttctactgcatttggatca
agaaaagtcggagctcctctatattgggcagaagtctactgcagtggagagaacttgaca
ggaaagtgggtgcatgttgatgctgtcaatgctattattgatggagaacagaaagtagaa
cctgcggctgctgcgtgcaaaacatctttgagatatgcagttgcttttgctggacttgga
gctaaagatgtgacccgcaggtattgcatgaaatggtacaagatagcatcacaacgagtt
gatccaatttggtggggcaccattttggccccattgaaggagttggagtccggagcaact
ggaggagtgatccatttggagcaggatgattcaaatggacaagagaaagtaggagcattt
aaaatttctgattctctaggtcaaaactgtattctagcagatgctgccatcttgcccggg
cagctagcaatggaagtgccaaaagaggcttgtaagaaactgggtgcagagtctcctgca
aggaatcctattattgctagcaggagctctcttgaggacatggacttggaaactagggca
ttaactgagcctcttccaactaatcaacaggcctacaaaacccatcacctttatgctctt
gaaagatggcttaataagtatcagatacttcatccaaaggggcctatattgggattttgt
tcaggtcatccagtctacccaaggacttgtgtccaaatactccatacaaaacaaagatgg
ctgcgtgaggggctgcaagtcaaagccaatgagcttcctgcaaaggtgttgaagcgttct
ctgaaactcagcaaagcacaaacttctgaagctgatgatcatggtgaagagggttgtgaa
gggaatattgtgctttatgggaagtggcaaacagaacctttgtgtctgcctcatgctgtc
aatgggattgttcctaagaatgaacgtggccaagtggatgtgtggtccgagaagtgcctg
ccaccaggaactgtgcacttaaggttgccacgggtggctcctgttgcaaagaggctggac
attgattttgcacctgctatggttggatttgaattccgaaatggtcgctctttacctgtc
tttgagggcattgtggtttgtgctgagtttaaggatgcggttttagaggcatatgcagag
gaagaagaaagaagagaggctgaagagaagaaaaggagcgaagcgcaagctattcttagg
tggtatcagcttctctcatccattgttacccggcaaaggttgaataactgttatggggat
ggtttggcgtcacaaacctgcaatgacattccgcaaacaaatgataaagttagtgcacag
gttggttgtagtgaggatgacaggcattctcctggatgtttggaactgaatgtattggac
agaaagttggatgttaagtcaatggtgcccacagaagaagaacacgagcatgcatttttg
acagatgatcaggcttttgatgaagagagttttacgaggacaaagcgatgtcgttgtggt
ttttctattcaagtggaggaaatgtag

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