Camellia sinensis (tea plant): 114260508
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Entry
114260508 CDS
T07364
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114260508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114260508
Enzymes [BR:
csin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114260508
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114260508
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114260508
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
114260508
NCBI-ProteinID:
XP_028056452
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MERYLSVFMVDFLPDTCLNAIGPGLILVSQGYWALLCCWLKGCSLANIVHGSLSVFVADF
LLDMCLNAIGPGSILVSQGYWALMENKLDFEPQRESRQLNYKYRIQSDKKVAICSVHPSE
QATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHERAATAVNENGAEEEELFGRFN
STGSGVVNTSLPASQSSPSLTNGATPVYPAAVAQRNGGETWFDVGRCKTYTPTADDIGHV
LKFECVVVDAETKLPVGLANTILTSRVIPAPSPSPRRLISVNNGVDVMGHLDADSRITST
GTFTVLSYNILSDAYGTSELYSYCPSWALSWPYRRQNLLREIVGYHADIVCLQEVQSDHF
EEFFAPELDKHGYQALFKRKTAEVFSGNIHIIDGCATFFRRDRFSHVKKYEVEFNKAAQS
LTDALVPNAQKKTALGRLVKDNVALIVVLEAKFNNQGIDNPGKRQLVCVANTHVNVHQDL
KDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNAVPGSAPHALLAIGKVDPMHPDLAVDP
LGILRPASKLAHQLPLVSAYSSFARMGVGLGLEQHRRRMDPTTNEPLFTNCTRDFIGTLD
YIFYSADTLTVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRTRR
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggagagatatttgtctgttttcatggttgattttctgcctgacacgtgtttaaatgct
attggtcctggtttaatattggtttctcaaggatactgggctttgttgtgctgttggctg
aaaggctgtagtctagctaatatcgttcatgggtctttgtctgttttcgtggctgatttt
ttgcttgacatgtgtttaaatgctattggtcctggttcaatattggtttctcaaggatac
tgggctttgatggagaataaattagattttgaacctcagagagaatcaaggcaactgaat
tacaagtaccgtatacaaagtgataagaaagttgctatctgcagtgtacatccatctgag
caagccacattgcagtgcctaggatgtgtcaaggccaaaataccagttgccaaaagctac
cattgctcacctaaatgtttttcagacgcatggcagcatcatcgtgttctgcatgaacgt
gctgctactgctgtaaatgaaaatggagctgaggaggaagaactatttgggcgcttcaac
agcacaggatctggtgtggtcaacacaagcttacctgcttcacaatcaagccctagcttg
acaaatggtgccacacctgtatatccggcagctgttgcacaaagaaatggtggtgaaaca
tggtttgatgttggacgctgcaagacttatacaccaacagctgatgatattggccatgtt
cttaaatttgagtgtgttgtggtggacgcagaaacaaaactacctgtgggacttgccaac
acaattttaacgtctcgtgtcattcctgctccatctcctagtccccgtcgcttgatctct
gtgaataatggagttgatgtgatgggccatttggatgcagatagtcgcattacatctact
ggaacttttacagtgctctcgtacaacatattgtctgatgcatatggcacaagtgaatta
tatagttattgcccttcttgggctctttcgtggccttatcgcaggcaaaatctgttgcga
gaaatagttggctatcatgccgacattgtttgtcttcaagaggttcaaagtgaccatttt
gaggaatttttcgcccctgaactcgacaaacatggttatcaagctctatttaaaagaaaa
acagcagaggtattcagtggaaatattcatataattgatggctgtgcaacatttttccgt
agagacagattttcacatgtcaaaaaatatgaggttgaatttaataaagctgcacagtct
ttaactgacgcgttggttcctaatgctcagaagaaaactgcactcggtcgattagtcaag
gataatgtcgcactgattgtggttctagaagcaaaattcaataaccaggggatcgataat
cctgggaaacgccagcttgtttgtgtggcaaatacacatgtgaatgtccaccaggatttg
aaggatgtcaagctctggcaggttcatactctcttaaaaggattggaaaaaatagctgcc
agtgcagacattcccatgctggtgtgtggggattttaatgctgttcctggaagtgcccct
catgcacttcttgcaattgggaaggttgatcctatgcatcctgatctagcagtagaccct
cttggaatcttacgccctgccagcaaactagcacatcagctgccattggtgagtgcctac
tcgtcctttgcaagaatgggggtcggtcttggcttagagcaacaccggaggagaatggac
cctaccacaaacgaaccgctattcacaaactgcaccagagattttattggcactcttgat
tacatattttactcagccgacactttaactgtggaatctttgttggagctcttggatgaa
gatagcttgaggaaagacacagcacttccttctcccgagtggtcttcagatcatatagca
ctgttagctgaatttcgctgcaagcctagaactagacgctga
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