Camellia sinensis (tea plant): 114261223
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Entry
114261223 CDS
T07364
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
csin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114261223
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114261223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114261223
04121 Ubiquitin system [BR:
csin04121
]
114261223
03400 DNA repair and recombination proteins [BR:
csin03400
]
114261223
Enzymes [BR:
csin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114261223
Spliceosome [BR:
csin03041
]
Complex B
Other components
Prp19 complex
114261223
Complex C
Prp19-CDC5 complex
114261223
Ubiquitin system [BR:
csin04121
]
Ubiquitin ligases (E3)
U-box type E3
114261223
DNA repair and recombination proteins [BR:
csin03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
114261223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_SPT8
U-box
PROPPIN
PEP5_VPS11_N
zf-Nse
KNTC1_N
WD40_like
WDR54
V_ATPase_I_N
PUMA_CC
PAS_11
Motif
Other DBs
NCBI-GeneID:
114261223
NCBI-ProteinID:
XP_028057261
LinkDB
All DBs
Position
Unknown
AA seq
524 aa
AA seq
DB search
MNCSISGEVPEEPVVSMKSGLLYEKRLIERHISEYGKCPITGEPLSVDDIVPIKTGKIMK
PRPVQAASIPGMLGMFQIEWDTLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQMPMSAPIATTVNASSLSNGKRGPEDEDIGPDGKRIRPGISASIIA
ELTDCNAALSQQRKKRQIPPTLAPIDALERYTQLSSFPLHKTNKPGILAVDILYSKDIVA
TGGVDTSAVLFDRPSGEILSTLNGHSKKVTSVKFVAEGDLVVTGSADKTVRLWQGSENGN
FDCRHILKDHTAEVQAVTIHATNNYFVTASLDNTWCFYDLSSGLCLAQVEDGSGSGGYTS
AAFHPDGLILGTGTSEALVKIWDVKSQANVARFDGHVGAVTAVSFSENGYFLATAAHDGV
KLWDLRKLRNFRTFAPYDENTPTQSVEFDHSGSYLAVAGSDIRVYQVANVKSEWNCVKTF
PDLSGTGKATCAKFGPDAKYLAVGSMDRNLRIFGLPGDDGPSES
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctcaatttccggtgaagtgccggaggagccagtggtttcgatgaagtctgga
cttctttacgagaagcgattgattgagaggcacatatccgagtatggaaaatgccctatt
actggggagcctctgtctgtggatgacattgtaccgatcaaaaccggcaagataatgaag
ccaagaccagtacaagctgcaagcattcccgggatgcttggaatgttccaaatagaatgg
gatacgcttatgctatccaattttgcattggagcaacaactacatacagcaaggcaagag
ctaagtcatgccttataccagcatgatgccgcttgtcgtgtgattgcaagacttaaaaag
gaaagggatgaggcaaggtcattactggctcaagcagaaagacagatgcccatgtcagca
ccgatagcgactacagttaatgcttcttctttgagcaatgggaaaagaggtcctgaagac
gaggatataggtcctgatggaaagagaatccgtcctggaatttctgctagcattattgca
gagctcacagactgtaatgcagcactttcacagcagcgcaaaaagcggcagatcccacca
acattggctcctattgatgctttggagaggtatacccaactctctagttttccacttcac
aaaaccaataaacctggcattttagctgtggatatcctgtattccaaggatattgtagcg
acgggtggggttgatacaagtgctgtactctttgatcggccatcaggagagattctatct
acacttaatggtcattcaaagaaggttacaagtgttaaatttgtagctgagggtgacttg
gttgttactggttcagctgataagactgtccgattatggcaagggtctgaaaatggcaac
tttgattgtaggcatatattgaaggatcatactgcggaggtgcaagccgtcactatccat
gccaccaataattactttgtgacagcttctcttgacaatacgtggtgcttttatgatctt
tcatctggtttatgcctcgcacaggttgaagatggttcaggatccgggggttatacatct
gcagcttttcatcctgatggtctcatcctgggaacaggcacctcagaggcacttgttaaa
atttgggatgtaaaaagtcaggcaaatgtagcgagatttgatgggcatgttggggcagta
actgctgtatctttctcagaaaatggttatttcctagcgactgcagcacatgatggagtt
aagttgtgggatctgcgcaaattgaggaacttccggacatttgcaccttacgatgaaaat
acaccaacacaatctgtggagttcgaccatagtggaagttaccttgctgttgctggctca
gatataagggtttatcaagttgcaaatgtcaagtctgagtggaattgtgtcaaaaccttc
cctgatttgtctggcacaggtaaagcaacttgtgctaaatttggtccagatgctaaatac
ctagcagtcggatcaatggaccgcaacctccgcatatttggcttgccaggggatgatggt
ccctcagaatcttaa
DBGET
integrated database retrieval system
