Camellia sinensis (tea plant): 114264006
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Entry
114264006 CDS
T07364
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114264006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csin03021
]
114264006
03019 Messenger RNA biogenesis [BR:
csin03019
]
114264006
Transcription machinery [BR:
csin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114264006
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114264006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Zn_Ribbon_TF
Motif
Other DBs
NCBI-GeneID:
114264006
NCBI-ProteinID:
XP_028060394
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MEMESSRRPLDRSREPGLKKPRLAEEQPIVDRNSNNRSFVASRYRANDRDRDSESSDSVR
GTFQQQQYQELVSQYKTALAELTFNSKPIITNLTIIAGENQHAAKAIAATICTNILEVAS
EQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSIHPGMRHLFGTWKGVFP
PQALQAIEKDLGFPPAVNGSSSGSTTSRTDSQPQRPAPSIHVNPKYLEARQRFQQSSRVK
GAASDSTGTMVNSLEDAERLDKAVGITSGKPWAEPPLKMHNIQRPQRDVLNESVCEKNIG
AASGDYEYGSDLSRHSGLGIGRASERVTERGFDKPWYGAGSNMAETISSQRNGFDIKHGF
PSYPAPRSTNTDVHLQPTQSVSGRSSSGMDRSWKNSDEEEYMWDDLNSRSSDHGAINRSK
KDRRMPDDSERLGYENHLRKRQNAHDVGSRVDREASTDSLSTEQRDQASFGHRMPSLWTQ
EQHSTDGHSGSGRIISGHSEGFPSSFSGLPTTASSLTRMPFNSQMGPSHLGTASFGFLTN
PVSGSTGSVGQRHSVGSASPSGQSPRHQHPPSPSLTRHPHQVLHTLNDQDNLQAHPLPHP
ELRKPQFSVPLNIKPPNQFSQDYVPVHTQNIHPGKSQKLPSQNIETSSPIMPSSQLKQHV
PYSQQLPPDPILSEPSGLSHKLPMPHIAGSGNPSTTGNSLSDNATPAETPGRQSTSSLLA
SIMNSGILTNNSVTDSLPKLGFQDSGSSSQSATQPPLPSGPPPTQFTPSGSSGPRFDAGS
PPSLPSHEKTPVSTTFSQRKVEQPPLPPGPPPSSLMGSVSAQASKTMNSVSTPVSSLLSS
LVAKGLISASKSESPTPVSERIPTQLQNQKASIIKTSSVPVSSVPVTSTITVSSNEDELS
KPAAKSSVTLSQSTPAEIKTLIGFEFKPDVIRQSHPSVISELIDDLPHCCNICGLRLKLQ
ERFERHMAWHALRNPEMNSLNKASRSWYANSADWVVGNSGMPSGYEFTGVLEAPSKAMEK
SEEMVSADESQCVCVFCGEVFEDFYCQERDEWMFKGAIYMTMPLGDGMVGTSSESAARGP
IVHAKCISESSVQDLGLASSV
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagttctcgcagacctttagatagatcaagagaaccgggtctgaagaaa
cctagattggccgaagagcaacccatcgtcgatcgcaattcaaacaacaggtcttttgtg
gcttcgagatatcgagctaacgacagagatagagactcggagagtagtgattcggtgaga
gggacttttcaacaacaacaatatcaagagcttgtgagtcagtacaagactgctcttgcg
gagctgactttcaattccaaacccatcattactaatttgactattattgccggagagaat
cagcacgctgcgaaggcgatcgcagctacgatctgcacgaacattctcgaggttgctagt
gagcaaaagcttccatcactttatcttttagatagtattgtgaagaatattgggagggat
tacataaaatattttgctgccagattacccgaggtattctgcaaggcatatagacaggtt
gactcttctattcatcctggaatgcggcatctttttggaacatggaaaggagtcttccct
cctcaggcacttcaggcgattgagaaagatcttggttttccacctgctgtcaatggttca
tcttcaggatctacaacatctagaactgattcacagcctcaacggccagcacccagcatt
cacgtaaatcctaagtatttagaggcaagacagcgttttcaacagtcaagcagggtaaaa
ggggcagccagcgacagtaccggaaccatggttaactcacttgaggatgcagagaggttg
gacaaggctgttggtattacttctgggaagccatgggcagaacctcctcttaagatgcat
aatattcagcgtcctcaaagagatgtgttgaatgagtctgtttgtgagaaaaacattggt
gcagcatcaggagattatgaatatggttctgatctttcaaggcattcaggtttgggaatt
ggaagagctagtgagagggttacggagagaggattcgacaaaccttggtatggagctggc
agcaacatggcagagacgatttccagccaaaggaatggttttgatatcaagcacgggttt
ccaagttacccagcccctagatcgacaaacactgatgtgcatctacagccaacacagagt
gtttccggtagaagcagcagtgggatggataggagctggaagaactctgatgaagaagag
tatatgtgggatgatttgaactctagatcaagtgatcatggtgcaatcaataggtcaaag
aaagatcgtaggatgcctgatgactctgaaagattgggctatgaaaaccatctccggaaa
cgacaaaacgcacatgatgttgggtcaagggtcgatagagaagcttcaactgattcactg
tccacagaacagagagatcaagcatcttttgggcatcgaatgccatcattgtggacacag
gaacaacattcaacagatggccattcaggctctggtagaattatctctggtcattcagaa
ggttttcctagttctttcagtgggttgccaacaactgcaagttctctaaccaggatgcca
ttcaattcacagatgggaccatctcatcttggtaccgcaagttttgggtttttgactaat
ccggtgtcaggttccactggatcagtggggcaacgacactctgtaggatctgcatcgcct
tctgggcagtcacctaggcaccagcatcctccctcaccttcgctaacgcgccatccccat
caagtattacacactttgaatgaccaagacaatctgcaagctcatccccttcctcatcca
gagctgagaaaacctcaattttcagtgccgttaaacattaagccacctaatcaattttct
caggattatgtgcctgtgcatactcagaatattcatccaggaaagtctcaaaaattgcca
tcccaaaatatagagacttcatctcccattatgccttctagtcaactgaagcaacatgtt
ccttattcgcagcaactaccaccagaccctatattgtctgaaccttctggtctatcccat
aagttgccaatgcctcatattgcaggttctggaaacccgtcaaccactgggaattcatta
tcagataatgcaactcctgcagaaaccccagggcgacaaagcacgagtagcttgttggcc
tcaataatgaacagtggaatactcactaacaactctgttactgatagcctgcctaaattg
ggttttcaggattctgggtcatcatctcaatcagcaacacaaccgcctctaccaagtggc
cctccgcctactcaattcacaccctctgggtcctcagggcctagatttgatgcaggatcc
ccaccaagtctaccttcccatgaaaaaacaccagtttccacaactttctctcagcgaaag
gttgaacagccgcctctgccacctggtcctcccccttcctcacttatgggtagtgtatca
gcacaagcttcaaaaacaatgaattctgtctctactccagtgtcaagtctactcagctca
ttggttgcaaagggattaatttctgcatcgaagtcagagtcaccaacacctgtgtcagag
cggattcctactcaactccaaaaccagaaagcaagcattatcaaaactagctctgtgcct
gtttcttcagttccagtaacctcaactatcacagtttcatctaatgaggatgagctttcc
aaacctgcagctaagagctctgtgacgttatctcaatccaccccagcagagataaaaact
ctcattggttttgagtttaagccagatgtgattcgtcagtcgcatccatctgtaatcagt
gaactcattgatgaccttcctcattgttgcaacatatgtggtcttcgacttaaacttcaa
gaacgatttgagagacacatggcgtggcatgcgttgagaaatcctgaaatgaacagttta
aataaggcttcaaggagttggtatgcgaattcagctgattgggttgttggaaactctgga
atgccatctggatatgaattcactggtgtgttggaagctcctagcaaggcaatggagaag
agtgaggagatggtttctgcagatgaaagtcaatgtgtatgtgttttttgtggtgaggtt
tttgaagatttctactgtcaagaaagggatgaatggatgttcaaaggagctatttacatg
accatgcctttgggagatggtatggtaggaacttcaagtgagagtgctgctaggggtcct
attgttcatgcaaagtgtatatcagaaagttcagttcaggatttgggattggccagcagt
gtgtaa
DBGET
integrated database retrieval system
