Camellia sinensis (tea plant): 114264674
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Entry
114264674 CDS
T07364
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114264674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114264674
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114264674
Spliceosome [BR:
csin03041
]
Complex C
Other components
Step II factors
114264674
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_30
GIPC1_GH2
Sigma54_activ_2
SLFN-g3_helicase
TsaE
PhoH
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
114264674
NCBI-ProteinID:
XP_028061167
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MALEGGLKKLEYLSLVSKVCTELESHLGFGDKVLAEFITDMGQKCQTVEEFDVELKENGA
EMPDYFVRTLLTIIHAILPPKPKSKSVKESKTDGSQGKKSIFPALAIGDSKDRVKEIEKE
IEMESKVWGRGDEEEELINHRDRDRGRDRDRRERRRERDKVERGDNRGDRYRNHHHDDDR
DRGRYRDRHDRHRRDGYEEDGDNREDDDRRDRRNNRYHSDEPELYQVYGGRVSRVMDTGC
FVQLTDFRGKEGLVHVSQIANRRISNTKDFVKRDQEVYVKVISVSGQKLSLSMRDVDQNS
GKDLLPLKKSSDDDAFRTNPSGVNNRGPTTRTGLSGIRIVEEDDAIPSRRPLKRMSSPEK
WEAKQLIAAGVMDVRENPMYDEDGDGFLYQEEGAEEELEIELNEDEPAFLQGQSRYSLDM
SPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGER
HLAQELRGVGLSAYDMPDWKKDAFGKALTFGQRSKLSIQDQRHSLPIYKLKNELIQAVHD
NQVLVVIGETGSGKTTQTTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGE
EVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDESLSQYSVVMLDEAHERTNHTDVLFGL
LKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTYPVEILYTKQPESDYLDAS
LITVLQIHLTEPEGDVLLFLTGQEEIDHACQSLYERMKGLGKNVPELIILPVYSALPSEM
QSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSLIITPIS
QASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSPSSIPEIQRMNLGLVTLTMKAMGINDL
LAFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPMEPPLSKMLLASVDLG
CSDEILTITAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGP
WCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAIAAGFFFHAARKDP
QEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRF
FKVADPTKMSKRKRQERVEPLYDRYHEPNSWRLSKRRA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggctttggaaggtggtttgaagaagctagagtacctctcattggtctcaaaggtatgt
acagagctggagtctcatttagggtttggggacaaggttttggccgaattcatcacggat
atgggtcaaaaatgccagacagttgaggaattcgatgttgaattgaaggaaaacggtgct
gaaatgcccgattattttgtccgcacacttttaactataattcacgcaattttgcctccc
aaacccaagtccaaatctgttaaggaatccaagactgatggctctcaaggcaagaaatca
atttttcctgctttggcgattggggacagtaaagacagagtgaaggagattgagaaagaa
atcgagatggaatcgaaggtttggggtcgcggagacgaagaagaggagcttataaaccac
agggatagggacagaggtagagacagagataggagagagaggcgaagagagagagacaag
gttgagaggggtgataataggggtgacaggtatagaaaccaccaccatgatgatgataga
gatagggggaggtatagggatcggcacgataggcataggagagatgggtatgaagaagat
ggggataatagggaagatgatgataggagggatcgaaggaacaataggtatcactcggat
gaacctgagttgtatcaggtttacgggggcagagtgtcaagagtgatggacactggttgc
tttgttcagctcactgattttaggggaaaagaaggtctggtccatgtttcacagatcgcg
aatcgaaggattagcaataccaaggattttgtaaaacgcgatcaggaggtttatgtgaaa
gtgatatcagtgtcaggtcagaagttgagtctttcaatgcgggatgttgatcaaaatagt
ggtaaagatttacttccattgaagaagagctcggatgatgatgcttttcggactaaccct
tcaggagtgaataatcggggtccaacaactaggacgggtctctcagggattagaatcgtt
gaagaggatgatgctatcccatcacgccggccactgaagagaatgagttcaccagaaaaa
tgggaagctaagcaactgattgctgcgggtgttatggatgttagggagaatcccatgtat
gatgaagatggagatgggtttctctatcaagaagagggtgctgaggaagagcttgaaatt
gagctaaatgaagatgaaccagccttcttgcaaggacagagccgatactctctagacatg
tcacctgttaaaattttcaagaatccggaagggtctttgagtcgtgcagcagcccttcag
tctgctctcataaaagagcggagagaagtaagggaacagcagcaaagaacaatgcttgac
tctatcccgaaagatctcaatcgtccgtgggaagacccaatgccagagacaggtgagagg
catcttgcacaggagcttaggggagttggtttatcagcatatgacatgcccgattggaaa
aaggatgcttttgggaaagccctgacttttgggcagagatcaaagctttctatccaggat
cagaggcacagcttgcctatttacaaattgaagaatgaattgattcaggctgtgcatgat
aatcaggttctggtggtaattggtgagacaggttcaggcaagacaacacagacgactcag
tatctagctgaagcagggtacactaccaagggcaagattggatgtactcagccccgtagg
gtggctgcaatgtctgtggccaagagagtcgctgaagagtttggttgccgtttaggtgag
gaagttgggtatgccattcgttttgaggattgtaccggaccagatacggtgattaagtat
atgactgatggtatgcttctgagagagattttggttgacgagagtttatctcagtattca
gtcgtaatgcttgatgaagctcatgagaggacaaatcatactgatgtcctttttggacta
ttgaagcagcttgtgaagaggagacctgaccttcgtttgattgtcacatctgccacatta
gatgcggaaaaattttctgggtatttctttaactgcaatattttcacaattcctggaaga
acttatcctgttgagatactctacaccaaacagccagaaagtgactacctagatgcatcc
ctaattactgttttacagattcacttgacagaacccgagggtgatgttctcctcttcttg
actggtcaggaagagattgatcatgcatgccagtctctttatgagaggatgaaagggttg
ggtaaaaatgttcctgaactaattattttaccagtctacagtgctcttccaagtgaaatg
caatccagaatctttgatcctgcccctccaggaaagaggaaagtggttgtagcaaccaat
attgcggaagcatctttgaccattgatgggatatattatgtgattgatccgggtttcgca
aagcaaaatgtttacaatcctaaacaagggcttgattcattgatcataactcctatttca
caagcgtcagccaagcaacgagctggccgggctggaagaaccgggcctggaaaatgttat
cgcctttacactgagagtgcttttcacaatgagatgtcaccctcatcaattccagaaatc
caaaggatgaatcttggattggtcacacttactatgaaagccatggggataaatgatctt
ctagcttttgatttcatggacccaccttcgcctcaagctctcatttctgccatggaacaa
ctgtacagtctaggagctcttgatgaggagggccttctgactaaattgggtaggaaaatg
gctgaatttccaatggaaccaccattgtctaagatgctacttgccagtgtagatcttggg
tgtagtgatgagattttgacaatcactgcaatgattcagactggaaacatcttctacagg
cctagggagaaacaagcccaagcagatcaaaagagagccaagtttttccaacctgaggga
gaccatctgacgttacttgctgtttatgaggcttggaaagccaagaatttttcgggtcca
tggtgttttgagaactttgttcagtctcgatccttgaggagggcacaggatgtacggaag
cagcttctcagcatcatggacaagtataaattggatgttgtgactgctgggaagaatttc
accaagataaggaaggcaattgctgcaggattttttttccatgcagcgagaaaagatcca
caagaaggttatagaactttggtagaaaaccagccagtttatatccacccgagcagtgct
cttttccagagacagcctgactgggtgatctaccatgagctggtaatgactacaaaggag
tacatgcgtgaggtcacagttgttgaccctaaatggcttgtggaactggcaccaagattc
ttcaaagtggcagatcccacaaaaatgagcaaacgcaagcgtcaagaacgcgttgaacct
ctttatgacagataccatgaacccaattcatggcgtttgagtaaaagacgtgcttga
DBGET
integrated database retrieval system
