Camellia sinensis (tea plant): 114265309
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Entry
114265309 CDS
T07364
Name
(RefSeq) uncharacterized protein LOC114265309
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114265309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csin03000
]
114265309
03019 Messenger RNA biogenesis [BR:
csin03019
]
114265309
04121 Ubiquitin system [BR:
csin04121
]
114265309
Enzymes [BR:
csin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114265309
Transcription factors [BR:
csin03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
114265309
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114265309
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114265309
Ubiquitin system [BR:
csin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114265309
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nab2-like_zf-CCCH_
zf-UDP
FYVE
Rtf2
Motif
Other DBs
NCBI-GeneID:
114265309
NCBI-ProteinID:
XP_028061879
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MSDEGERNCPLCAEEMDLTDRQLKPCKCGYEICIWCWHHIMNMAEKDETEGRCPACRTPY
NKEKIVGMAANCGRLVAEMNIERKMKSQKAKSKTSEGRKQLSSVRVIQRNLVYIVGLPLN
LADEELLQHREYFGQYGKVLKVSISRTAAGTIQHFANNTCSVYITYSKEEEAVRCIQSVH
GFFLDGRSLRACFGTTKYCHAWLRNVPCSNPDCLYLHEVGSQEDSFTKDEIISAYTRSRV
QQITGATNNMQRRSGNVLPPAADEYYINSSISSGKPISKSASNNLASSIRGSPPNSSSGQ
SVVLPAAASWGTRTSNIQPPSASLACSNGPSNQKPETCSGSLPFSTAVSGTTQVSLLHGD
IGKELISNEEGQTNIHKGKQEPLEPGRQYEGTDRQTTASEAPAPSGLPVTSMNGQLHSPP
LLEDKDRFISVAPNITSAFDLSGQSYGSDKDLNVTANENFQNFCSDMASLNIDGRLGDEH
SRDARPNSSLSDNILVYSPRNQGSQFREPLMSIALRKSVASTDDSFITREQSDLRSDFLP
REQSGWKSDSQTQVANKDSQVAISEVEEDLRYFEDQRLKDPEIVTRTSYCSNPSNSFHLS
SHSSVYSSQQNGPYGSSNFNRNSQILDNKVDKVAALHQFGVSRVPNRYPEDRISSSVDSD
RTGEYSYLLPSEVKRMHVGRYEGEAINDDQNVAANVGESSIISNMLSVDFDAWDESLTSP
QNMAKLLGETDRRQGSHKSSSSWKGQNSSQSRFSFARQESTNQLSGVEPSLSNIGQMLKD
RPSRLDFAENRDFNFDRLGDCNGFSTFNIEESDNFAGSYSHLSSNNLSVARAQVPPPGFS
MPNRAPPPGFACHERMEPSFDAMSWNPLLDASSHRNQYQALPAGNIGNPADIEFMDPAIL
AVGKGRLPGGLNNAASLDMRSNFSSQLSAFENEARLQLLMQRSLSPLQNQRYADMGVGFA
QLNDAYRISSRIMEQSLPNNLSPFSQLALQQPRTALMSNGQWDAWNEVQSGNDMGMAELL
RNERLGYNKVYNGYEDSKFQMPGSGDLYNRTYGI
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgaaggagaaaggaattgtcctctctgcgcggaagagatggatttgacagat
cggcaactgaagccttgcaaatgtggttatgagatctgcatttggtgctggcatcacata
atgaacatggctgagaaggatgagacagaagggcgatgtcccgcatgccgtaccccttat
aacaaggaaaagatcgtagggatggcagcaaactgtggaaggttggtggctgagatgaat
atagagagaaaaatgaagtcacagaaggcaaaaagtaagacatctgaaggaagaaagcaa
ctcagtagcgtgcgagtgattcaacggaatctcgtctacattgtggggttacctctaaat
ctagcagatgaagagcttctccagcacagagagtattttggtcagtatggaaaagtgttg
aaggtgtctatatctcggacagcagctggtactattcaacattttgcaaacaatacttgt
agtgtatatattacttactcaaaggaggaggaagcagttcgatgtattcaatcggtacat
gggtttttcttggatggtagatctttgagggcatgttttggaaccacaaagtattgtcat
gcatggctgagaaatgtgccttgcagcaatcctgattgtctgtatttgcatgaggttggt
tcacaagaggatagtttcactaaagatgaaataatatcagcatacacaaggagtagagtc
caacaaattactggtgctacgaataatatgcaacggcgttcagggaatgtgttaccacca
gcagcagatgagtactacattaacagctccatttcctctggaaaacctattagtaaaagt
gcttcaaataatttggcaagcagtattagaggttctccgccaaatagtagctctggtcaa
tctgttgttcttccagcagcagcctcatggggaacacgcacctctaatatccagccgcca
tctgcaagtttagcatgttcaaatggaccttcaaaccagaaacctgaaacatgtagtggt
tcattgccattttcaacggcagtttcaggcacaactcaggtttctttattgcatggtgat
attggaaaggaacttatttccaatgaagagggccaaacaaatatacataaaggtaaacag
gagcctctggaacctggtagacagtatgaagggacagatcgtcaaacaactgcttctgag
gctcctgccccttcaggacttcctgttacatcaatgaatggtcagttacattctccgcca
ttattggaggacaaagatagattcatcagtgttgcacctaatattacaagtgcttttgac
ctttctgggcagtcttatggttcagataaagacctgaatgttactgctaatgaaaatttt
caaaatttttgttctgatatggcgtcattgaacattgatggacgtcttggggatgaacat
tctagggatgccaggcctaatagttcactttctgataatatcttggtttattcacctcga
aatcaggggtcacaatttagagaacctttgatgtcaattgccctcaggaaatctgtggca
tctactgatgatagttttattacaagagaacaatcagatctgagatcagattttcttcca
agagaacagtctggttggaaatcagattcccaaactcaagtagcaaacaaagattcacaa
gttgcaatttctgaagtggaagaggatttgcgatattttgaagatcagagactcaaggat
ccagaaattgttactcgcacaagctactgctctaatccatctaattcctttcatctttct
agccattctagcgtgtattcttctcagcagaatgggccctatggttcatccaatttcaac
cgaaattctcaaattttagataataaagttgacaaagtcgcggcactgcatcagtttggt
gtttcaagggtacctaatagataccctgaggatagaatcagtagttctgttgattcagac
aggacaggtgaatattcttatttacttccaagtgaagtgaaaagaatgcatgtagggaga
tatgaaggtgaagcaattaatgatgaccaaaatgttgctgcaaatgtgggagagagcagc
ataatatcaaatatgctgtcagtggactttgatgcatgggatgagtcattgacttcacct
cagaatatggctaagttgttgggtgaaactgataggcggcagggatctcataaatcatca
agttcctggaaaggacaaaatagcagtcaatccaggttctcttttgcaagacaggagtct
acaaatcaattatctggtgtcgaaccatctttgagtaatatagggcaaatgctgaaggac
cgtccttcaagacttgattttgctgaaaacagagattttaattttgataggcttggtgat
tgtaatggtttctctacatttaacattgaggaatctgataatttcgctggcagctattct
catttatcctctaataatctttcagtcgcaagagctcaagttccacctcccggattttca
atgcccaacagagcaccaccgccaggctttgcttgtcatgagagaatggaaccatctttt
gatgccatgtcttggaatcctttgcttgatgcttcctcgcatagaaatcaatatcaggca
ctgccagctggaaatattggtaatcctgcggatattgagttcatggatcctgcaattttg
gcagttggcaagggtagacttcctggtgggcttaataatgctgcgagcttagacatgaga
tcaaacttctcttcacagttaagtgccttcgaaaatgaggctagacttcagttgttgatg
caaagatctctttctcctctacagaaccagagatatgccgacatgggggttggttttgct
cagcttaatgatgcttatagaatttcttcaaggattatggagcaatcattacccaacaat
ctatcccctttttcacaactcgctcttcaacagcctagaactgcactgatgtcaaatggt
cagtgggatgcttggaatgaagttcagagcggaaacgatatgggtatggcagagctctta
agaaatgagagactcggatataacaaagtctataatggttatgaggattcgaagtttcag
atgcccggttcaggcgatctatacaacaggacatatgggatttga
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integrated database retrieval system
