Camellia sinensis (tea plant): 114268307
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Entry
114268307 CDS
T07364
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114268307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114268307
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114268307
Spliceosome [BR:
csin03041
]
Complex C
Other components
Step II factors
114268307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
nSTAND3
AAA_19
ABC_tran
AAA_30
ATPase
T2SSE
AAA_16
FtsK_SpoIIIE
PhoH
NB-ARC
AAA_23
nSTAND1
Motif
Other DBs
NCBI-GeneID:
114268307
NCBI-ProteinID:
XP_028065246
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MPSMAPGGAKNSNQSNNQLNSKVSNDDRRAEFFARKHRIAQQRKSLPIASVEKRLVEEVR
SNNILIIVGETGSGKTTQLPQFLFNAGLCHDGKVVGITQPRRVAAVSVAKRVAEECGVQL
GQRVGYSIRFDDTTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLL
GLLKSVQKVRSVPINECPNIDRMKANNGLLMEKENDAQRASILKQCRGIKLSPLKLIIMS
ASLDARVFSEYFGGARAVHVQGRQFPVDILYTRHPETDYLDATLITLFQIHLEEGPGDIL
VFLTGQEEIESVERLVQEKLRQLPEDNQKVKVLSIFSSLPSEKQMQVFMPAPTGFRKVIL
ATNIAETSVTIPGIKYVIDPGFVKARTYCVHTGMESLNIVPTSKAQALQRSGRAGREGPG
KCFRLYPESEFEKLSDSTDPEISRCNLSNVILQLKALGVDDIIGFDFMEKPSSTAVVKSL
ELLVLLGALTEEYKLSDPVGHQMARLPLEPIYSKALILASQFNCLEEMLITVAMLSVESV
FYNPREKLEERFYSTRTAPFNAVLHQSYVKKARTAAKCFSSLEGDHPTLIAVYRAFDEFS
EKSNLGNSREKTEKNLRKWCKENFINSRALRHARDIHRQIQGNIEQMGLGIASCGDDMLQ
FRRCLAAAFFLNAALKQPDGTYRVLSSGQVVQIHPSSVFFRTKPDCIIFDEFVRTTHNYV
RNVTRIDYLWLAELAPQYYTLQEQEQE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaatggctcctggcggagccaagaactccaaccagagcaataatcaactgaac
agtaaagtatccaatgacgatcgcagggccgaattcttcgccaggaagcataggattgcg
caacagagaaaatcactaccaatcgcttcagttgaaaaacgacttgtggaggaggtcagg
agtaacaatatattgataattgttggtgaaactggaagtggaaaaacaacacagttgcca
cagtttctgtttaatgcggggttatgccatgatgggaaagtcgttggtatcacgcaacct
agacgtgttgcagctgttagtgttgcaaaacgggtagctgaggaatgtggtgttcaattg
ggccaaagagttgggtattccattagatttgatgatacgacttccagttcaacaaggatt
aaatacatgacagatggattgcttttgagggaagcgttattggacccatatctctctaga
tattcagttattattgttgatgaggctcacgagagaactgtccacactgatgtcttgctg
ggtttactgaaaagtgtacagaaagtaaggtcagtacctatcaatgaatgccctaatatt
gaccgtatgaaggctaacaacggtctgctgatggagaaagaaaatgatgctcaacgtgct
agtattctcaagcagtgtaggggcataaagctcagtccattgaagttaatcatcatgtct
gctagtctggatgcacgagttttttctgagtattttggtggtgctagagctgttcatgtt
caagggcgacagtttcctgtggatatactctacactcgtcatcctgagacagattacctt
gacgccactttaataactttatttcagatacatttggaggagggtcctggtgatatactt
gtattcttgactggccaagaagagattgaatctgttgagaggcttgtccaagaaaaactt
cgacaattgccagaagacaatcagaaggtcaaagttttgtcgatattctcatctctccct
tcagaaaagcagatgcaggtctttatgccagctccaactggatttcgcaaggtaatactg
gcaactaatattgctgaaacttctgtaacaatacctggaatcaagtatgtgatagatcct
ggattcgtgaaagcacgcacctactgtgttcatacagggatggaatcattgaacattgtt
ccaacctcaaaagcacaggctcttcaaagaagtggacgtgcaggccgtgaaggacctgga
aaatgcttccgcctctatcctgagagtgaatttgagaaactcagtgattccacagatcca
gagattagccggtgcaacctttcaaatgtcattttgcaactcaaggctcttggtgttgat
gatattattgggtttgacttcatggaaaaaccatcaagtacagctgttgtcaaatcattg
gagttactggtcttgctaggtgctctaacagaggaatataaattgtcagatccagttggg
catcaaatggcccggctacccttagagcctatttattccaaggcacttatcctggctagt
cagttcaattgcttggaagaaatgttaataactgttgcaatgctgtcagtggaatctgta
ttttataaccctcgtgagaagttagaggagcgcttttacagcaccagaacagctcctttc
aacgctgtactacaccaatcttacgtgaaaaaggcacgaactgcagcgaagtgcttctca
agtctagagggagatcatccgactttgattgctgtatatcgagcttttgatgagttctcg
gaaaagagcaatctggggaacagtagagaaaaaactgaaaaaaatctcagaaaatggtgc
aaggaaaatttcatcaatagccgtgccctaaggcatgctcgtgacattcacaggcaaatt
cagggaaatattgaacaaatgggtctaggtattgcatcttgtggagatgacatgcttcaa
tttcgccgttgccttgctgctgcttttttcctcaatgcagctttgaagcagcctgatggt
acatacagggttttgtcaagtggtcaggtggtgcagatccatccttcttctgtatttttc
cggacaaagccagactgcataatttttgatgagtttgtccgaactactcataattacgtg
cgcaatgttactagaattgattacttgtggttagctgagctcgctcctcagtactatacc
ttgcaagagcaggagcaggagtag
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