Camellia sinensis (tea plant): 114268309
Help
Entry
114268309 CDS
T07364
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114268309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114268309
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114268309
Spliceosome [BR:
csin03041
]
Complex C
Other components
Step II factors
114268309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
nSTAND3
AAA_19
ABC_tran
AAA_30
T2SSE
AAA_23
FtsK_SpoIIIE
PhoH
ATPase
NB-ARC
Motif
Other DBs
NCBI-GeneID:
114268309
NCBI-ProteinID:
XP_028065253
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MPSMAPGGAKNSNQSNNQLNGKVSNDDRRAEFFARKHRIVQQRKSLPIASVEKRLVEEVK
SNNILIIVGETGSGKTTQLPQFLFNAGLCHDGKVIGITQPRRVAAVSVAKRVAEECGVQL
GQRVGYSIRFDDTISRSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLL
GLLKTVQKVRSGPINECSNIDRMKANNGLLMEKENDAQRASILKQYRGIKLSPLKLIIMS
ASLDARVFSEYFGGARAVHVQGRQFPVDILYTHHPETDYLDATLITLFQIHLEEGPGDIL
VFLTGQEEIESVERLVQEKLRQLPEDNQKVKVLSIFSSLPSEKQMQVFMPAPTGFRKVIL
ATNIAETSVTIPGIKYVIDPGFVKARTYCAHTGMESLIIVPTSKAQALQRSGRAGREVPR
KCFRLYPESEFEKLSDSTIPEIRRCNLSNVILQLKALGVDDIIGFDFMEKPSSEAVVKSL
ELLVLLGALTEEYKLSDPVGHQMAQLPLEPIYSKALILASQFNCLEEMLITVAMLSVESV
FYNPREKLEEARTAAKCFSSLEGDHPTLIAVYRAFDEFLEKSNLGNSREKTEKNLRKWCK
ENFINSRALRHARDIHRQIQGNIEQMGLGIASCGDDMLQFRRCLAAAFFLNAALKQPDGT
YRVLSSGQVVQIHPSSVFFRTKPDCIIFDEFVRTTHNYVRNVTRIDYLWLAELAPQYYTL
QEQEQE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaatggctcctggcggagccaagaactccaaccagagtaataatcaactgaac
ggtaaagtatccaatgacgatcgcagggccgaattcttcgccaggaagcataggattgtg
caacagagaaaatcactaccaatcgcttcagttgaaaaacgacttgtggaggaggtcaag
agtaacaatatattgataattgttggtgaaactggaagtggaaaaacaacacagttgccg
cagtttctgtttaatgcgggattatgccatgatgggaaagtcattggtattacacaacct
agacgtgtcgcagctgttagtgttgcaaaacgggtagctgaggaatgtggtgttcaattg
ggccaaagagttgggtattccattagatttgatgatacgatttccaggtcaacaaggatt
aaatacatgacagatggattgcttttgagggaagcgttattggacccatatctctctaga
tattcagttattattgttgatgaggctcacgagagaactgtccacactgatgtcttgctg
ggcttactgaaaactgtacagaaagtaaggtcaggacctatcaatgaatgctctaatatt
gaccgtatgaaggctaacaacggtctgctgatggagaaagaaaatgatgctcaacgtgct
agtattctcaagcagtataggggcataaagctgagtccattgaagttaatcatcatgtct
gctagtctggatgcacgagttttttctgagtactttggtggtgcgagagctgttcatgtt
caagggcgacagtttcctgtggatatactctacactcatcatcctgagacagattacctc
gatgccactttaataactttatttcagatacatttggaggagggtcctggtgatatactt
gtattcttgactggccaagaagagattgaatctgttgagaggcttgtccaagaaaaactt
cgacagttgccagaagacaatcagaaggtcaaagttttgtcgatattctcatccctccct
tcagaaaagcagatgcaggtctttatgccagctccaactggatttcgcaaggtaatactg
gcaactaatattgctgaaacttctgtaacaatacctggaatcaagtatgtgatagatcct
ggatttgtgaaagcacgcacctactgtgctcatacagggatggaatcattgatcattgtt
ccaacctcaaaagcacaggctcttcaaagaagtggacgtgcaggccgtgaagtacccaga
aaatgcttccgcctctatcctgagagtgaatttgagaaactcagtgattccacaattcca
gagattagacggtgcaacctttcaaatgtcattttgcaactcaaggctcttggcgttgat
gatattattgggtttgacttcatggaaaaaccatcaagtgaagctgttgtcaaatcattg
gagttactggtcttgctaggtgctctaacagaggaatataaattgtcagatcctgttggg
catcaaatggcccagctacccttagagcctatttattcgaaggcacttatcctggctagt
cagttcaattgcttggaagaaatgttaataactgttgcaatgctctcagtggaatctgta
ttttataaccctcgtgagaagttagaggaggcacgaactgcagcgaagtgcttctcaagt
ctagagggagatcatccgactttgattgctgtatatcgagcttttgatgagttcttggaa
aagagcaatctggggaacagtagagaaaaaactgaaaaaaatcttagaaaatggtgcaag
gaaaatttcatcaatagccgtgccctaaggcatgctcgtgacattcacaggcaaattcag
ggaaatattgaacaaatgggtctaggtattgcatcttgtggagatgacatgcttcaattt
cgccgttgccttgctgctgcttttttcctcaatgcagctttgaagcagcctgatggtaca
tacagggttttgtcaagtggtcaggtggtgcagatccatccttcttctgtatttttccgg
acaaagccagactgcataatttttgatgagtttgtccgaactactcataattacgtgcgc
aatgttactagaattgattacttgtggttagctgagctcgctcctcagtactataccttg
caagagcaggagcaggagtag
DBGET
integrated database retrieval system
