KEGG   Camellia sinensis (tea plant): 114268518
Entry
114268518         CDS       T07364                                 
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    114268518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csin03021]
    114268518
   03019 Messenger RNA biogenesis [BR:csin03019]
    114268518
Transcription machinery [BR:csin03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     114268518
Messenger RNA biogenesis [BR:csin03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     114268518
SSDB
Motif
Pfam: zf_PCFS4 CID zf_UBZ Pcf11_C zf-C2H2_4
Other DBs
NCBI-GeneID: 114268518
NCBI-ProteinID: XP_028065504
LinkDB
Position
Unknown
AA seq 1049 aa
MDEERFVSSRENPRFLGGFSNGGINNVNKPIMPGGEIVVQKGLPTILDRFKAILKEREEE
MMVLSSEEVTVEIVRLYELVLSELTLNSKPIITDLTIIAGEQREHAEGIADAICARIIEA
SVEQKLPSLYLLDSIVKNIGREYVRHFSSRLPEVFCEAYRRVHPNLHPAMRHLFGTWSTV
FPPAVLRKIEAQLQFSPSANNKSTGLTSMRASESPRPTHGIHVNPKYLEARRQFEHSIAD
NNNQDPRGSSSTLKIYGQKLASGYDEYDSDNAEVMSSQTGAQQLSSTGHAGHTSFTLGAG
KLLPTSAARLAKSSSPFRIERGRSLSPPGDEFAVDNSPRRVVEQASPSHLGFEYGFARKT
AREDVSSDWMRNHWSDGNYRRFETSAVYNNDVELQRPRALIDAYGNDQRKQTLNTKPLKV
DINGIDNKVGTKTWQDTEEKEFDWEDMSPTFVDRSRSNDLLPPSIPPLDSFRTRPGHGTY
NPLPLGTDFRRRNMSSHAHAQISLVNDSSTNLEDAVPNVNSGGGSSSNIMGLHDETTQFL
GSRYPQEARNFPHYLAQSLQHPLNFKGSARHFQKFPSSGGEQNPPINSFPDADSQNHGSS
TVVSRMGAASIDSWKSEPLSDSVPPSTGAWPPVHIQKSHPLPMLPHLPSQQQSKSQFDSI
NASNTIMNQGLNKSFLPEHQFNGIENKALSSIKLPSFHNQQAGRFPSNPQNPEQVTSVHP
QLPLSQDVRQNLVPPPAVPAVVSMPSLVPPLAHGYNLQGNNTTISNVLSNSAPGVHPYMP
ILSTPSSSMLFQGGGLPPLPPGPRPTSSQMLPISHNPVPIGPHPQSGSAFSGLFSSLMAQ
GLISLTKQAPVQDSVGLEFNPDVLKVRHESAITALYADLPRQCTTCGLRFKSQEEHRSHM
DWHVTRNRISKTRKQKPSRKWFVSVSMWLTGTEAMGTEAAPGFLPAESVVEKRMMKNLLV
PADEDQXVCALCGEPFDDFYSDETEEWMYKGAVYMNVPNGSTAGMDRSQLGPIVHAKCRS
ESSVVSPEGFGLDGGGYTEEGSQRKRLRS
NT seq 3150 nt   +upstreamnt  +downstreamnt
atggacgaagagaggttcgtatcttctcgagaaaaccctagatttcttggtgggttcagc
aacggtggtatcaacaacgtcaataaacccatcatgcctggtggtgaaatcgtagtgcaa
aagggtctgcctacgattctcgatcgattcaaggctatcttgaaggagagagaagaggaa
atgatggttttgtcaagcgaagaggttacagtagaaattgtaaggctctatgaattggtt
ttgtcggagctcactttgaattccaagccaatcatcaccgatctcacgataattgctgga
gaacagagagagcacgccgaggggattgctgatgcgatttgtgcgaggattattgaggct
tcagttgagcaaaaacttccttctctttatcttttagacagcatcgtgaagaatattggc
cgggaatatgttcggcacttctcttcccgtttgcctgaggttttctgcgaggcctacagg
cgagttcaccctaacctgcatcctgctatgcgccacctctttgggacctggtcgacagtg
tttccacctgcagtacttcgcaagattgaggctcaattgcaattttctccatcagcaaat
aataaatctactggcctgacttccatgcgggcttctgaatcgcctcgacccactcatgga
atacatgtcaatccaaaatacttggaagcaagacgtcaattcgaacattcaattgcggat
aataacaatcaggatccaagaggatcttcttcaactttaaagatctatggacaaaaactt
gccagtggatatgatgaatatgattctgataatgcagaagtcatgtcatcacagactgga
gcccaacaattgagctcaactggtcatgcaggtcatacttcttttactcttggtgctgga
aagctgcttccaacttcggctgccaggcttgcaaagtcgtcctctccttttagaattgag
cgtggcaggtcattatcacctccaggtgatgaatttgcagtggataattctcccagaagg
gttgttgaacaggcttccccctctcatcttggatttgaatatggatttgccagaaagaca
gccagagaggatgtatcaagtgactggatgagaaatcactggtctgatggtaattatagg
cgatttgaaacttctgctgtatataataatgatgttgagctgcaaagaccgagagcgtta
attgatgcttatggaaatgatcaaaggaaacaaactctgaacaccaagcctttgaaggtt
gatatcaatggcatagacaataaggttggtacaaaaacatggcaggatactgaagaaaaa
gagtttgattgggaagatatgagcccaacttttgtagaccgcagtcggagtaatgatcta
cttccaccatcaattccacctcttgatagctttaggacaagacctggccatggaacatac
aatccattacccctgggcactgatttcaggagaagaaacatgtccagtcatgcgcatgcg
cagatttctttggttaatgattcttcaactaatcttgaagatgcagttccaaatgtcaat
tcaggcggtggatcaagcagtaacattatgggattacatgatgagactacacaatttttg
ggatctcgttatcctcaagaagctcggaattttccgcactatcttgctcagtctttgcaa
catcctcttaatttcaaaggaagtgcaaggcatttccaaaaatttccttcatcaggtggt
gagcaaaatcctccaattaacagttttccagatgccgattcacaaaatcacgggtcctct
actgtggtatcaaggatgggagctgcaagtattgattcttggaagtccgagcctctgtca
gattctgtaccaccatcaacaggggcttggcctccagtacatatacaaaaatctcaccca
cttcctatgctacctcatcttccatcgcagcaacagagtaagagccagtttgattcaata
aatgctagcaatacaattatgaatcaaggtctaaataagtcatttttgcctgagcatcag
tttaatggtattgaaaacaaggcactgagctcgataaagctgccttcatttcacaatcag
caggctggacgattcccttcaaatccacagaacccggaacaagtcacttctgtacatcct
caattgccattgtctcaggatgttcggcaaaatttggttccacctcctgcagttcctgct
gtggtttccatgccatctctggtaccacccttggctcatggatataacctacaagggaat
aataccactataagtaatgtactgtcaaactcagctcctggtgtgcatccatatatgccg
attctcagtacaccaagcagctctatgctttttcaagggggtggtttgccgcctttacct
ccagggcctcgtcctacttcatcacaaatgttacctatctcacacaatccagttcccatt
ggccctcatcctcaatctgggagtgcattttcgggtttgtttagttctctcatggctcaa
ggtttgatctcattgacaaaacaagctcctgtgcaggattctgttggacttgagttcaac
cctgatgttcttaaggtgcgccacgaatctgcaataactgctttatatgctgatctccca
agacaatgcacgacatgtggccttaggttcaaatcccaagaggagcaccgtagtcatatg
gattggcatgtcacaagaaaccggatatccaaaacccgtaagcagaagccttcccgtaag
tggtttgtcagtgttagcatgtggcttactggcacagaagcaatgggaactgaggcagcc
cctgggtttttacctgctgagagtgttgtggagaagaggatgatgaagaatttgcttgtt
cctgctgatgaggatcaanntgtctgtgcactgtgtggagagccttttgatgatttttat
agtgatgagactgaggaatggatgtacaagggagctgtatacatgaatgttcccaatggg
tcaacagcaggcatggataggtctcagttgggccccatagtacatgcaaaatgcaggtcc
gagtctagtgtggtttcccctgaaggttttggactagatggagggggatatactgaagag
ggtagtcaaaggaaacggttgcggagttag

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