Entry |
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Name |
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like
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KO |
K14400 | pre-mRNA cleavage complex 2 protein Pcf11 |
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Organism |
csin Camellia sinensis (tea plant)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:csin00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114268518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:csin03021]
114268518
03019 Messenger RNA biogenesis [BR:csin03019]
114268518
Transcription machinery [BR:csin03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114268518
Messenger RNA biogenesis [BR:csin03019]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114268518
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
Unknown
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AA seq |
1049 aa
MDEERFVSSRENPRFLGGFSNGGINNVNKPIMPGGEIVVQKGLPTILDRFKAILKEREEE
MMVLSSEEVTVEIVRLYELVLSELTLNSKPIITDLTIIAGEQREHAEGIADAICARIIEA
SVEQKLPSLYLLDSIVKNIGREYVRHFSSRLPEVFCEAYRRVHPNLHPAMRHLFGTWSTV
FPPAVLRKIEAQLQFSPSANNKSTGLTSMRASESPRPTHGIHVNPKYLEARRQFEHSIAD
NNNQDPRGSSSTLKIYGQKLASGYDEYDSDNAEVMSSQTGAQQLSSTGHAGHTSFTLGAG
KLLPTSAARLAKSSSPFRIERGRSLSPPGDEFAVDNSPRRVVEQASPSHLGFEYGFARKT
AREDVSSDWMRNHWSDGNYRRFETSAVYNNDVELQRPRALIDAYGNDQRKQTLNTKPLKV
DINGIDNKVGTKTWQDTEEKEFDWEDMSPTFVDRSRSNDLLPPSIPPLDSFRTRPGHGTY
NPLPLGTDFRRRNMSSHAHAQISLVNDSSTNLEDAVPNVNSGGGSSSNIMGLHDETTQFL
GSRYPQEARNFPHYLAQSLQHPLNFKGSARHFQKFPSSGGEQNPPINSFPDADSQNHGSS
TVVSRMGAASIDSWKSEPLSDSVPPSTGAWPPVHIQKSHPLPMLPHLPSQQQSKSQFDSI
NASNTIMNQGLNKSFLPEHQFNGIENKALSSIKLPSFHNQQAGRFPSNPQNPEQVTSVHP
QLPLSQDVRQNLVPPPAVPAVVSMPSLVPPLAHGYNLQGNNTTISNVLSNSAPGVHPYMP
ILSTPSSSMLFQGGGLPPLPPGPRPTSSQMLPISHNPVPIGPHPQSGSAFSGLFSSLMAQ
GLISLTKQAPVQDSVGLEFNPDVLKVRHESAITALYADLPRQCTTCGLRFKSQEEHRSHM
DWHVTRNRISKTRKQKPSRKWFVSVSMWLTGTEAMGTEAAPGFLPAESVVEKRMMKNLLV
PADEDQXVCALCGEPFDDFYSDETEEWMYKGAVYMNVPNGSTAGMDRSQLGPIVHAKCRS
ESSVVSPEGFGLDGGGYTEEGSQRKRLRS |
NT seq |
3150 nt +upstreamnt +downstreamnt
atggacgaagagaggttcgtatcttctcgagaaaaccctagatttcttggtgggttcagc
aacggtggtatcaacaacgtcaataaacccatcatgcctggtggtgaaatcgtagtgcaa
aagggtctgcctacgattctcgatcgattcaaggctatcttgaaggagagagaagaggaa
atgatggttttgtcaagcgaagaggttacagtagaaattgtaaggctctatgaattggtt
ttgtcggagctcactttgaattccaagccaatcatcaccgatctcacgataattgctgga
gaacagagagagcacgccgaggggattgctgatgcgatttgtgcgaggattattgaggct
tcagttgagcaaaaacttccttctctttatcttttagacagcatcgtgaagaatattggc
cgggaatatgttcggcacttctcttcccgtttgcctgaggttttctgcgaggcctacagg
cgagttcaccctaacctgcatcctgctatgcgccacctctttgggacctggtcgacagtg
tttccacctgcagtacttcgcaagattgaggctcaattgcaattttctccatcagcaaat
aataaatctactggcctgacttccatgcgggcttctgaatcgcctcgacccactcatgga
atacatgtcaatccaaaatacttggaagcaagacgtcaattcgaacattcaattgcggat
aataacaatcaggatccaagaggatcttcttcaactttaaagatctatggacaaaaactt
gccagtggatatgatgaatatgattctgataatgcagaagtcatgtcatcacagactgga
gcccaacaattgagctcaactggtcatgcaggtcatacttcttttactcttggtgctgga
aagctgcttccaacttcggctgccaggcttgcaaagtcgtcctctccttttagaattgag
cgtggcaggtcattatcacctccaggtgatgaatttgcagtggataattctcccagaagg
gttgttgaacaggcttccccctctcatcttggatttgaatatggatttgccagaaagaca
gccagagaggatgtatcaagtgactggatgagaaatcactggtctgatggtaattatagg
cgatttgaaacttctgctgtatataataatgatgttgagctgcaaagaccgagagcgtta
attgatgcttatggaaatgatcaaaggaaacaaactctgaacaccaagcctttgaaggtt
gatatcaatggcatagacaataaggttggtacaaaaacatggcaggatactgaagaaaaa
gagtttgattgggaagatatgagcccaacttttgtagaccgcagtcggagtaatgatcta
cttccaccatcaattccacctcttgatagctttaggacaagacctggccatggaacatac
aatccattacccctgggcactgatttcaggagaagaaacatgtccagtcatgcgcatgcg
cagatttctttggttaatgattcttcaactaatcttgaagatgcagttccaaatgtcaat
tcaggcggtggatcaagcagtaacattatgggattacatgatgagactacacaatttttg
ggatctcgttatcctcaagaagctcggaattttccgcactatcttgctcagtctttgcaa
catcctcttaatttcaaaggaagtgcaaggcatttccaaaaatttccttcatcaggtggt
gagcaaaatcctccaattaacagttttccagatgccgattcacaaaatcacgggtcctct
actgtggtatcaaggatgggagctgcaagtattgattcttggaagtccgagcctctgtca
gattctgtaccaccatcaacaggggcttggcctccagtacatatacaaaaatctcaccca
cttcctatgctacctcatcttccatcgcagcaacagagtaagagccagtttgattcaata
aatgctagcaatacaattatgaatcaaggtctaaataagtcatttttgcctgagcatcag
tttaatggtattgaaaacaaggcactgagctcgataaagctgccttcatttcacaatcag
caggctggacgattcccttcaaatccacagaacccggaacaagtcacttctgtacatcct
caattgccattgtctcaggatgttcggcaaaatttggttccacctcctgcagttcctgct
gtggtttccatgccatctctggtaccacccttggctcatggatataacctacaagggaat
aataccactataagtaatgtactgtcaaactcagctcctggtgtgcatccatatatgccg
attctcagtacaccaagcagctctatgctttttcaagggggtggtttgccgcctttacct
ccagggcctcgtcctacttcatcacaaatgttacctatctcacacaatccagttcccatt
ggccctcatcctcaatctgggagtgcattttcgggtttgtttagttctctcatggctcaa
ggtttgatctcattgacaaaacaagctcctgtgcaggattctgttggacttgagttcaac
cctgatgttcttaaggtgcgccacgaatctgcaataactgctttatatgctgatctccca
agacaatgcacgacatgtggccttaggttcaaatcccaagaggagcaccgtagtcatatg
gattggcatgtcacaagaaaccggatatccaaaacccgtaagcagaagccttcccgtaag
tggtttgtcagtgttagcatgtggcttactggcacagaagcaatgggaactgaggcagcc
cctgggtttttacctgctgagagtgttgtggagaagaggatgatgaagaatttgcttgtt
cctgctgatgaggatcaanntgtctgtgcactgtgtggagagccttttgatgatttttat
agtgatgagactgaggaatggatgtacaagggagctgtatacatgaatgttcccaatggg
tcaacagcaggcatggataggtctcagttgggccccatagtacatgcaaaatgcaggtcc
gagtctagtgtggtttcccctgaaggttttggactagatggagggggatatactgaagag
ggtagtcaaaggaaacggttgcggagttag |