Camellia sinensis (tea plant): 114271398
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Entry
114271398 CDS
T07364
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114271398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csin03021
]
114271398
03019 Messenger RNA biogenesis [BR:
csin03019
]
114271398
Transcription machinery [BR:
csin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114271398
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114271398
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
114271398
NCBI-ProteinID:
XP_028068817
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MSFAAYKMMHSPTGIENCASGFITHCSADFGPQIPPIQTDDLDSDWPESKPVGPIPNLVV
TAANVLEVYVVRVQEEGSSRDSRAPSEPKRGGVLAGASGASLELVCHYRLHGNVETMAIL
SLAGADGGRRRDSIVLAFQDAKISVLEFDDSIHGLRTSSMHCFEGPDWLHLKRGRESFAS
GPLVKVDPQGRCAGVLIYGLQMIILKAAEAGSGLVGEENAFSAGGAVSARIESSYIINLR
DLDMKHVKDFIFVHGYIEPVMVILQEQELTWAGRVSWKHHTCMISALSISTTLKQHPLIW
SATNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCMLALNNYAVPIDSSQEMPRSS
FSVELDAANATWLLNDVAMLSTKTGELLLLTLVYDGRVVQRLDLSKSRASVLTSGITTVG
NSLFFLGSRLGDSLLVQFSCGMGAPTFHHGLKEEVEDIEGDVPSAKRLRRSPSDTLQEMV
NGEELSLYGSGPNNAQSAQKTFSFAVRDSLINVGPIKDFSYGLRINADPNAVGIAKQSNY
ELVCCSGHGKNGALCVLQQSIRPEMMTQEQLPGCKGIWTVYHKNTRSHNVDSSKTALEDD
EYHAYLIISLENRTMVLEAASNLEEVTETVDYYVQGSTIAAGNLFGRRRVVQVFARGARI
LDGAFMTQDLSFRAPNSESGSGSESLTVSTVSIADPYVLLTMTDGSVQLLVGDPSTCTVS
TSIPAIFESSKKLITACTLYHDKGSEPWLRKTSTDAWLSTGIGETIDGSDGTSQDQGDIY
CVVCYESGTLEIFDVPNFNCVFSVDKFVSGKAYLVDTFIQEPSGDPQETMNKNSEELPGQ
VRKENTQNLKVVELAMQRWSGQHSRPFLFGILTDGTILCYHAYLFEALENASKNEEVVSV
QNSVDLSSISTSRLRNLRFVRVPLDTYAREETSPGTPCQRITIFKNVGGYQGLFLSGSRP
AWFMIFRERLRVHPQLCDGPIVAFTVLHNLNCNHGLIHVTSQGILKICRLPSVSCYDNYW
PVQKIPLKGTPHQVTYFAEKNLYPLIVSVPVLKPLNQVLSSMIDQELGHQIEHDNLSFDG
SYTVDEFEVRILEPEKSGGPWQTKATIPMQSSENALTARVVTLFNTTTKENETLLAIGTA
YVQGEDVAARGRVLLFSIERNPDNSETLVSEVYAKELKGAISALASIQGHLLIASGPKII
LHMWTGSDLNGIAFSDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLSLLAKDF
GSLDCFATEFLIDGSTLSLIVSDEQKNVQIFYYAPKMLESWKGQKLLSRAEFHVGAHVTK
FLRLQMLPTLSDRTNANPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVD
AVPHVAGLNPRSFRQFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQIGTTRSQ
IMSNLNDLTLGTSFL
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgcagcctacaagatgatgcactcgcccacgggcatcgagaactgcgcctcc
ggattcatcactcattgtagcgccgactttggcccccaaattcctcccattcagaccgac
gatctcgactccgactggcccgagtccaagcccgttggcccaattcccaacctcgtcgtc
accgccgctaacgttttggaggtttacgtagttagggttcaggaagaaggcagcagcaga
gactccagagctccctcggaacccaagcgtggcggcgttttggccggtgcatcgggggct
tcgctcgaactcgtttgccattacaggttgcatggtaatgttgaaacaatggcaatatta
tccttagcgggtgctgacggtggtagaagaagagattcgattgtcttagcgtttcaagat
gctaaaatttcggttctagagtttgatgactcgattcatggacttcgtacaagctctatg
cattgttttgagggtccggattggcttcatctgaaaagaggaagagaatcttttgcaagt
ggcccattggtgaaggttgacccccagggcaggtgtgctggggttctcatttatggccta
caaatgataatactcaaggcggctgaggccggttctggtttggttggtgaagagaatgct
tttagtgctggaggtgcagtctctgctcgtattgagtcatcatatataatcaatttacga
gatctggacatgaagcatgtaaaggatttcatatttgtacatggttacattgagcctgtg
atggtaattcttcaagaacaagagcttacatgggctgggcgtgtctcgtggaaacatcat
acctgtatgatttctgcacttagtattagcacaactctgaagcagcatcctctcatatgg
tcagctactaatctcccacatgatgcttacaagcttcttgccgtgccatccccaattggt
ggagttcttgtcattggtgcaaatactattcattatcatagtcagtctgcatcatgcatg
ttggctttgaacaactatgctgttcccattgatagcagccaagagatgccaagatcaagt
ttcagtgtagagcttgatgctgccaatgcaacttggttattaaatgacgtggccatgctg
tcaactaaaactggggaacttcttctgctgacacttgtttatgatgggcgggtcgtgcag
agacttgatctttcaaagtcaagagcttcagtacttacttcgggaatcaccacagttgga
aactcattattttttttgggtagtcgactgggagatagtttgctcgtgcagttttcttgt
ggcatgggagcaccaacattccatcatggtctgaaggaagaggttgaagatattgaagga
gatgtcccttcagcaaagagattaaggagatcaccatctgatactttacaggagatggtt
aatggcgaggagctttccttatatggttcaggtccaaataatgcacagtccgcacagaag
actttctcatttgcagtgagagattcactgattaatgttggtcctataaaggacttctct
tatggcttaaggattaatgctgatccaaatgcggtgggaattgctaagcaaagtaattat
gaactggtgtgctgttctggtcatggtaagaatggtgctctctgcgtgcttcaacagtca
attcggccagaaatgatgactcaggaacaattacctggttgcaagggaatatggactgtt
taccacaagaacacacgcagtcataatgttgattcttcaaagacggctttggaggatgat
gaatatcatgcgtatttgattattagtttggagaatcgaaccatggtattagaggcagct
agtaacttagaggaagttactgaaactgttgactactacgtgcagggaagtacaattgct
gcaggaaatctctttggaaggcgtcgagtagtccaagtctttgctcgtggtgctcgaatt
cttgatggtgcttttatgactcaagatttaagctttcgagctccaaactctgaatctggc
tcaggttctgaaagcttgacagtatcaactgtttctatagctgatccatatgtgttactg
acaatgactgatggaagtgttcagcttcttgttggagatccttctacttgcactgtttct
accagcattccagcaatatttgaaagctcaaagaaattgataactgcctgtacactttat
catgataaaggatctgagccctggctacggaagacaagtactgatgcatggctttctaca
ggcataggggagacaattgatgggtctgatggtacatctcaagatcagggtgatatctac
tgcgttgtttgttatgaaagtggtactcttgaaatctttgacgtgcctaattttaattgt
gttttctccgtggataaatttgtgtctggaaaggcctatcttgtagatacctttatccag
gagccatctggtgatcctcaagaaactatgaataaaaattctgaagaattacctggccaa
gttaggaaagagaatacccaaaacttgaaggttgttgagttggctatgcaaagatggtcg
ggacagcatagtcgcccttttctttttggaatattgactgatggaactattctttgctac
catgcttacctatttgaagctttagaaaatgcttccaaaaatgaggaagttgtttctgtt
cagaattctgttgaccttagcagtataagcacctctaggcttagaaatctgagatttgtt
cgtgtgcccttggacacatatgcaagggaggagacatcacctggaaccccatgccaacga
ataaccatcttcaagaatgttggtggttaccaaggattattcctttctgggtcaaggcca
gcttggttcatgatattcagggaacggcttcgagttcatccacagctatgtgatggacct
attgttgccttcactgtccttcacaatttgaattgtaatcatggtcttatacatgttacc
tcacagggtattctgaaaatttgccggctgccatctgtatcatgctatgataactattgg
cctgtacaaaaaattccattgaagggcactccacatcaagtcacttactttgctgagaag
aatctatacccacttatagtttctgttccagtccttaagccattgaatcaagttctgtca
tctatgattgatcaagaattaggtcatcagattgagcacgataacttgagttttgatggg
agttacactgtagatgaatttgaggttcggattttggaaccggaaaagtctggtggccct
tggcaaactaaggctacaattccgatgcaaagttctgaaaatgccctgactgcgcgagtg
gttacactatttaatacaacaacaaaagaaaatgaaacacttttggctattggaactgct
tatgttcaaggggaggatgtcgctgcaagagggcgtgtgctcttgttttctattgaaaga
aatccagataattcagagactttggtttcagaggtttacgcaaaggagttgaagggcgct
atatctgctctagcttcaattcaaggtcatttgttgatagcttctggtcctaagataatc
ttacacatgtggacaggttcagatttgaatggtattgccttttctgatgctcccccgctt
tatgttgtgagcttaaacatcgttaaaaattttatcctccttggtgacattcataagagc
atatactttcttagttggaaggaacagggagctcaacttagcttgttggccaaggatttt
ggctcacttgattgtttcgcaacagagtttttaattgatggaagtacacttagtctgata
gtttcagatgagcaaaaaaatgttcagatattctattatgcgccgaagatgttagagagt
tggaaaggacagaagcttctttcaagggctgagtttcatgttggtgctcatgtgactaag
ttcttgcggttacagatgcttcctactttatctgatcgaaccaatgctaatcctggctct
gacaaaaccaatcgatttgctctattatttggcaccctcgatggcagcattggctgtatt
gcacctcttgatgaactcacatttcgtagactgcagtcactgcagaaaaagcttgttgat
gctgttccccatgtcgctggactaaatccaagatcttttcgtcagttccgttcaaatgga
aaagctcatcggcctggccctgacagcatagttgactgcgagttgctttgccattatgag
atgctcccactggaggaacagcttgagattgctcaccagattggaacgactcggtcacag
attatgtcaaacttgaacgacctaactctgggcacaagcttcttgtga
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integrated database retrieval system
