Camellia sinensis (tea plant): 114272284
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Entry
114272284 CDS
T07364
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
csin
Camellia sinensis (tea plant)
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csin03036
]
114272284
Chromosome and associated proteins [BR:
csin03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114272284
microRNA pathway
RISC loading complex
114272284
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
PAZ
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_dsRBD
Dicer_PBD
TrbI_Ftype
SNF2-rel_dom
Cas3-like_C_2
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
114272284
NCBI-ProteinID:
XP_028069748
LinkDB
All DBs
Position
Unknown
AA seq
1981 aa
AA seq
DB search
MEYEGEARVSGSLNPPPAKEDVGEAFYWLDACEEEDMSCHFIDDFVDSDAAAISEAGLDP
CFFGGIDQILDSIKNGDGLPVVGGPPKMEQVLEDQLLNKFDDDTTAASKNNDNGGQSPSN
NNSDAAAATTETCKHHCQTNSNSNGNDNKSPNHSPERNGVRSSLEETRGTDDLYRDRDRD
EDDKVLSEGKRSNKRARVNDYNYKTERHFHNRGGGGQHRPRERERRKRPRNWEEDIIDRR
ERDHISRRERYGSGKKREWRESKGFWERERPGSNEMVFRLGSWESERNREGKAPSERNQD
CIAKVEKKPEEAKEEKLPEEQARQYQLDVLKQAKQKNTIAFLETGAGKTLIAVLLIKSVC
SDLQLQNKRMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFET
KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPTENRPS
VFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSVVCTIKDRKELEKHVPMPSEIVVEYDK
ATSLWSLHEQIKQMELAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGA
ANLIQKLRAINYALGEIGQWCAYKVAQSFLTALQNDERSNYQLDVKFQESYLSKVVTLLQ
CQLSEGAVSENNSKNATADNDATQGGSGLDEIEEGELPSSHVVSGGEHVDVIIGAAVADG
KVTPKVQSLIKILLKYQHTVDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN
SREMRTSQMQDTIGKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR
ARKPGSDYILMVERGNLSHEAFLRNARNSEVTLRKEAVERTDLSHLKGTSRLISVDTTPG
TVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIVERHEMPGGPIEYSCRLQL
PCNAPFEKLEGPVCSSMRLAQQAVCLAACQKLHELGAFTDMLLPDKGSGEGEKVDQNDEG
DPLPGTARHREFYPEGVANILQGDWILSGRDACYNSKLFHLYMYDIECVDIGSLQDPFLT
QVLEFAVVFGNELDAEVLSMSMDLFIARTMITKASLVFRGSIDITESQLASLKSFHVRLM
SIVLDVDVEPSTTPWDPSKAYLFVPVVGDNSVDPLKEIDWYLVEKISKTDVWNNPLQRAR
PDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDIVKASGLVPNRN
AFEIGNHLDLTKGKLMMADSFIGVEDLVGRIVTAAHSGKRFYVDSVRYDMTAENSFPRKE
GYLGPLEYSSYADYYRQKYGVELIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHDGESEEA
LDKTYYVFLPPELCFVHPLPASLVRGAQRLPSIMRRVESMLLAIQLKDIINYPVPASKIL
EALTAASCQEPFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRLRQQMVSNMVLYQ
YALNKGLQSYIQADRFAPSRWAAPGVLPVFDEDIKETGSSLFDDETALGVTVPGEAQDAD
GYEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGIYYVEGGKNAANHLMKWIGIQIDF
DPKELECTTRPSNVPESILRSINFDALEGALNINFKDRGSLVEAITHASRPSSGVSCYQR
LEFVGDAVLDHLITRHLFFTYSDLPPGRLTDLRAAAVNNENFARVAVKHKLHMHLRHGSS
ALEKQIRDFVKEVKDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWR
VFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRNGNLATVEVFIDGVQVGIAQ
NPQKKMAQKLAARNALVALKERETAEAKNASEDGKKKNGSQTFTRQTLNDICLRRNWPMP
LYRCVSEGGPAHAKRFTFAVRVNTTDRELTEECIGEPMPSVKKAKDSAAVLLLELLNKLY
P
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atggaatatgagggggaggctagggtttcaggaagccttaatcctcctccggcgaaggaa
gatgtaggggaggccttttactggttggatgcttgtgaggaggaggatatgtcctgccat
tttattgacgattttgttgattcggatgctgccgccatttcggaggctgggttggatcct
tgtttcttcggaggaatcgatcagattctcgacagcattaagaatggtgacggtctacct
gttgttggaggaccgcccaagatggaacaagtccttgaggaccaattactgaacaaattt
gatgatgatactactgcggctagcaagaataatgacaatggagggcaatctcctagtaac
aacaacagcgatgccgctgctgccactactgagacttgcaagcatcattgtcaaaccaat
agcaatagcaatggcaatgacaacaaatcaccaaaccattctcctgaaagaaatggagtt
cgcagcagccttgaagaaactcgaggcactgatgatctttatagggaccgggaccgggac
gaggacgacaaagtacttagtgaaggaaaaaggtccaacaaaagagctcgcgttaatgac
tacaattacaagactgaaaggcactttcacaacagaggaggaggagggcaacaccgccct
agggagagggagagacggaagaggcctcgcaattgggaggaggatattattgacaggagg
gagagagatcatatctcgagaagagaacgctatggcagtggtaaaaagagggagtggagg
gaaagcaagggtttttgggagagagaacgccctggttcaaatgagatggttttccgcttg
ggtagttgggaatctgaaagaaacagagaggggaaggcaccctctgagagaaaccaggat
tgcattgccaaggtagagaagaaacccgaagaggctaaggaggagaaacttcccgaggaa
caggcacgtcaataccagttggatgttctcaaacaggcgaagcagaaaaataccatagct
tttcttgaaacaggggcagggaagaccctcattgctgtcctcctcataaaaagtgtttgc
agtgacttgcaattacaaaacaagagaatgctggctgtatttttggttcctaaagttcct
cttgtttatcagcaagcagaagttattcgtgagcgaactggttatcaagtaggccattac
tgtggtgaaatgggccaagacttctgggatgctcggaggtggcagcgtgagtttgaaaca
aagcaggttttagtgatgacagctcaaatacttttgaacattctaagacacagcataata
aagatggaagctatcaatctacttattctggatgaatgtcatcatgctgtgaagaaacac
ccatattctctagtgatgtctgagttctatcacacaacacctacggagaataggccatca
gtttttggaatgactgcttctcctgttaatttaaagggtgtttccagtcaggtggattgt
gcaattaaaattcgtaatctcgaaactaaactagattctgtagtttgtacaataaaagat
cgtaaggagctggagaagcatgtaccaatgccctcagaaattgtggtggagtatgacaaa
gcgactagcttatggtccctacatgaacaaataaaacaaatggagttggcagttgaagaa
gctgctcaatcaagttctaggagaagtaaatggcaatttatgggagcaagagatgctgga
gccaaggaagagctgcggcaagtttatggggtctctgaaagaacagaaagtgatggtgct
gctaatctaattcaaaagttgagggctattaactatgcacttggtgaaataggacaatgg
tgtgcttacaaggtcgctcaatcttttttgacagctttacaaaatgatgaaaggtcaaac
taccagcttgatgtaaagtttcaagaatcatacttaagtaaagttgtcactctcttgcaa
tgccaactgtcagaaggagccgtttcagagaataactcaaaaaatgcgactgcagataat
gatgccactcaaggcgggagtggccttgatgaaatagaagagggggagcttccttccagt
catgttgtctctggtggagagcatgtggatgtaattataggagctgctgtagccgatgga
aaagttacaccgaaggtgcagtccttgattaaaatacttcttaaatatcagcatacagtg
gatttccgtgcaatcatctttgttgagcgagttgtggctgccttagttctcccaaaggtt
tttgctgagcttccatccttgagttttgtcaagtctgcaagtttgattggacacaacaat
agtcgagaaatgcggacaagccaaatgcaagacacaattggcaaattccgagatggtcgt
gtgactttgctggtagccactagtgttgctgaggaaggtcttgatatacgacaatgcaat
gttgttatccgctttgaccttgcaaaaactgttctagcatacattcaatctaggggtcga
gctagaaagcctggttcagattacattttgatggttgagaggggaaatttatcacatgaa
gcatttttgaggaatgccagaaatagtgaagtgactttgcggaaggaagcagtagaaaga
actgaccttagccatctgaagggtacctcgaggttaatttcagtggatacaacaccgggt
acagtgtaccaggtggagtcaactggtgctgttgtgagcttaaattctgctgtgggactc
atccatttctattgctctcagctaccaagtgacagatattcaattcttcatcctgagttt
attgtggagcgccatgagatgccaggaggccccattgaatattcatgcaggctccagctc
ccctgtaatgcacccttcgaaaaactcgagggtcctgtttgcagttcaatgcgccttgca
caacaggctgtttgtttggctgcttgccagaagcttcatgagctgggggcatttactgac
atgctcttgccagacaagggaagtggggaaggagaaaaagttgaccaaaatgatgaagga
gatccactccctgggactgcaaggcacagggagttctatcctgaaggtgtagctaatatt
ctccagggagattggattctatctgggagggatgcttgctacaattccaagttgtttcat
ctttacatgtatgatattgaatgtgtagatattggctccttacaagatccattcctaact
caagttttggagttcgctgtagtcttcggcaatgagctggatgcagaggttttatcgatg
tcgatggatctctttattgctcgaaccatgataacaaaggcatctcttgttttccggggg
tcaatagatattactgaaagtcagttggcatcccttaagagctttcatgtgagactaatg
agtattgtactggatgtggatgttgaaccgtccactactccttgggatccttcaaaagca
tatttgtttgtccctgtggttggcgataattctgtagatcctctaaaagaaattgactgg
tatctggttgaaaaaataagtaagacagatgtgtggaacaatccccttcagagagctcgg
cccgatgtttaccttggtaccaatgagcgaacactaggtggagaccgaagggagtatgga
tttggaaaattgcgtcatggcatggcttttgggcagaaatctcatcctacctatggcatt
agaggagctgtagcacaatttgacattgtgaaagcatctggattggttcctaatcggaat
gcttttgaaattggaaatcatttggatttgactaaaggcaaactgatgatggcagattct
tttataggcgtggaagatctggtggggagaattgtaaccgctgctcactctggaaagagg
ttttatgtggactctgtacgttatgatatgactgcagagaactcattcccgaggaaagag
ggctaccttggtccattggagtacagctcttatgctgattactacaggcaaaagtatgga
gtcgagttgatctataagcaacaacctcttataagagggcgtggtgtttcatattgcaag
aatctcctttctcctcgatttgaacattcagaagctcatgatggtgaatctgaagaggca
cttgataaaacatattatgttttccttcctcctgagctgtgttttgtacatccactccct
gcatcacttgttcgaggtgcccagagattgccctcaataatgaggagggttgagagcatg
ctccttgccattcagcttaaggatataattaattatcctgtccctgcttcaaagatcttg
gaagccttgactgctgcttcatgccaggaacctttctgctatgaaagagcagagcttctg
ggagatgcttacctgaaatgggttgtgagcagatttctttttcttaaatatcctcggaaa
cacgagggtcagcttactagactgagacaacaaatggtgagtaacatggtcttatatcag
tacgctttgaataagggacttcaatcatacatccaagcagatcgatttgctccatccaga
tgggctgctcctggggtgctgcctgtctttgatgaggatatcaaagagacgggatcatcc
ttatttgacgatgaaacagcacttggtgtgactgtacccggagaagctcaagatgctgat
gggtatgaagatgatgaaatggaagatggtgagctcgagagtgattcaagttcatatcga
gtcctctctagcaagacactagcagatgttgttgaagcacttatcggaatatattacgtt
gaaggcgggaagaatgctgctaaccacctcatgaaatggattgggattcagatagatttt
gatcctaaagagttagagtgcacaaccaggcctagcaatgttccagagagcatacttagg
agcatcaattttgatgctttagaaggggccttaaacatcaattttaaagataggggctcg
ctggttgaagctattactcatgcttcaaggccatcatctggagtttcatgttaccagagg
ctggagtttgttggcgacgcagtcttggatcaccttattacaaggcatttgttttttaca
tactcagatttgcctcctggtcgcttgactgatttgcgagctgctgctgtaaacaatgaa
aactttgcacgggtagccgttaaacataagcttcacatgcaccttcgacatgggtcaagt
gcccttgaaaaacagattcgagattttgttaaggaagttaaagatgaattgtcaaaacca
gggtttaactcctttggtttgggggattgcaaagctccaaaggttcttggtgacattgtt
gaatctattgctggtgccatctttctggacagtggacgtgatactgctgttgtttggagg
gtcttccaacctttgctgcatccaatggttactccagaaacattaccaatgcatccagtg
cgggaactgcaagaacggtgccagcaacaggctgaaggactggagtacaaagcctctcga
aatggaaatttggctactgttgaagttttcatcgatggggtccaggttgggattgctcag
aatccacaaaagaaaatggctcagaagttagctgccaggaatgcccttgttgctttgaaa
gaaagggaaacagcagaagctaagaatgctagtgaagatgggaagaagaagaatggcagc
cagacatttactagacagacattgaatgacatatgcttgcgtagaaattggccaatgcca
ctgtatcggtgtgtaagtgagggtggccctgcgcatgcgaaaaggtttacttttgctgta
cgagtgaatactactgatagggaattgacagaagaatgtattggagagcctatgccgagc
gttaagaaagccaaggattctgcagcagttcttctcttagaacttctaaataaattgtac
ccatga
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integrated database retrieval system
