KEGG   Camellia sinensis (tea plant): 114273280
Entry
114273280         CDS       T07364                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03013  Nucleocytoplasmic transport
csin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114273280
  09122 Translation
   03013 Nucleocytoplasmic transport
    114273280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csin03019]
    114273280
   03041 Spliceosome [BR:csin03041]
    114273280
Messenger RNA biogenesis [BR:csin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     114273280
Spliceosome [BR:csin03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    114273280
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st EIF3I Beta-prop_WDR41 WDR55 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_Nup120_160 Beta-prop_ACSF4 Beta-prop_Aladin Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 114273280
NCBI-ProteinID: XP_028070843
LinkDB
Position
Unknown
AA seq 382 aa
MKMKVKMELGIDCRNWDEDAYRNTILQDRQTQCRTVFRTSFPPSLSPNPPDLIVAASSDG
SLASYSISSLLSSPPLGLGFGNGRVQNLLQAEPQCFLQGHDGPAYDVKFYGNGEDSLLLS
CGDDGRIRGWRWKEISKPEEHIPWQGGHLKPVLDLVNPQHKGPWSALSPIPENNSIAVDN
QGGSIFAAAGDSCAYCWDVEKSEIKMVFKGHSDYLHCIVARNSGNQIITGSEDGTARIWD
CKSGKCIQVIDPGKDKKLKEFFPFVSCIALDASESWLACGNGRTLSVWNLPARECISRIS
THASIQDISFDDNQILAVGAEPLLTRYDMNGAILSRIQCAPQSAFSISVHPAGVTAVAGY
GGLVDVVSQFGSHLCTFRCRCQ
NT seq 1149 nt   +upstreamnt  +downstreamnt
atgaaaatgaaagtgaaaatggaattggggatagactgccggaactgggacgaagacgct
tacagaaacaccatattgcaggaccgccaaacccaatgccgaaccgtcttccgaacctcc
ttcccaccctctctctcccctaacccccccgacctcatcgtcgccgcctccagcgacggc
tccctcgcctcttactccatctcctctctcctctcctctcccccattgggtttaggtttt
ggtaatggtagggttcagaatttgttgcaggctgaacctcagtgctttcttcaagggcat
gatggacctgcttatgatgtcaaattttatggcaacggcgaagattctttgttgttgagc
tgtggtgatgatggccggattcgagggtggaggtggaaggaaatctcaaaaccagaggag
catattccttggcaaggaggccatttgaagccagtacttgacttggtgaatcctcaacat
aaagggccgtggagtgctctttctccgatcccagagaacaattccattgctgttgataat
cagggtggatccatttttgcggctgctggtgattcttgtgcgtattgctgggatgtggag
aaaagtgaaatcaaaatggttttcaaggggcactcagactacttgcattgtattgttgcc
cgtaattctggcaatcagattataactggatcagaagatgggacagcacgaatatgggat
tgcaaaagtggaaagtgtattcaagtaattgacccagggaaggataagaagttgaaagag
ttctttccatttgtcagttgcattgctcttgatgcaagtgagagctggttggcttgtggc
aatggccggactttgtctgtttggaatcttcctgctcgtgagtgcatttcgaggatatcc
actcatgcttctatccaagatatttcatttgatgataatcaaatattggcagttggagca
gaaccattactcactcgatatgatatgaatggggctattctttcacggatacaatgcgca
cctcaatcagcattttccatttctgttcatccagcgggtgttacagcagtggcgggttac
ggaggtctagtggatgttgtttcacaatttggaagccacttatgcacatttcggtgtaga
tgccagtaa

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