Camellia sinensis (tea plant): 114274442
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Entry
114274442 CDS
T07364
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114274442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114274442
Spliceosome [BR:
csin03041
]
Complex C
Other components
Step II factors
114274442
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
114274442
NCBI-ProteinID:
XP_028072162
LinkDB
All DBs
Position
Unknown
AA seq
605 aa
AA seq
DB search
MDLLQSYADTDMDDDNQQFQQLQPQPQPQPPSIQNPSSTASDHSSSPDSSPPRISLPSKS
SAPKVDDTMLALTIADSNRALTKPLDPSQHVVVFNPTYDQLWAPIYGPSHPYAKDGIAQG
MRNHKLGFVENAAIEPFVFDEQYNTFHKYGYAADPEGNNYVGDLDRLKETDGISVYNIPQ
HEQKKRKLEKKKESVENEEEGSGEVERVEVDNPASETWLLKNRKSPWAGKKEGLQVELTE
EQKKYAEEYAKKKGDEKSGNSEKGEVVADKSTFHGKEERDYQGRSWIAAPKDAKATNDHC
YIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA
VRDIWFCNDGSKFLTAGYDKNIKYWDTETGQVISAFSTGKIPYVVRLNPDEDKQNILLAG
MSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIK
YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTREIFQLNKKKRFAGHIVAGYACQV
NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL
IKYWD
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctacagtcatacgcagacaccgacatggacgacgacaatcaacaatttcaa
caactacaaccacaaccacaaccacaaccaccctcaattcaaaaccctagctccaccgcc
tccgaccactcatcatcgccggactcatcgccgcctcggatctccctcccttccaaatcc
tccgcccccaaagtcgacgacacaatgcttgctctcacaatcgccgactccaatcgagcc
ctaaccaagcccctcgatccttcccaacacgtcgtcgtcttcaaccccacctacgatcag
ctctgggcaccaatctatggcccttcacatccctacgccaaggacggtattgctcaaggt
atgcgcaatcacaagctagggtttgttgagaatgctgcgattgaaccctttgttttcgat
gaacagtacaatacttttcataaatatgggtacgcagctgatccagagggaaacaattat
gttggtgatttggatagattgaaggaaactgatggcatttctgtgtataatatacctcaa
catgagcagaaaaagaggaaacttgagaagaagaaggagagtgtggagaatgaagaggaa
ggtagtggtgaggttgagcgggtggaggttgacaacccggcttcggagacgtggttgttg
aagaatcgaaagagtccgtgggcgggaaagaaggaagggttgcaagtggagttgacggag
gagcagaagaagtatgctgaggagtatgcgaagaagaagggtgatgagaagagtgggaat
agtgaaaagggtgaggttgttgctgataagagtacatttcatgggaaggaggagagggat
tatcaaggtaggtcttggattgctgcgcccaaggatgctaaggctaccaatgatcattgt
tatattcccaagagattggtgcatacttggagtgggcacacgaagggtgtgtctgcaatt
cggtttttccccaagcacgggcatttgattctctcggcaggaatggataccaaggtgaag
atctgggatgtgtttaattcaggtaaatgtatgaggacttacatgggacattcgaaggcg
gttcgtgatatttggttttgcaatgatggaagtaagtttctgactgctggatatgataag
aacatcaaatactgggatacagaaacaggacaggtgatatcggcattctcaacagggaag
ataccttacgtggttaggctgaacccggatgaggataagcagaacattcttttagcaggc
atgagtgacaagaagattgttcagtgggatatgaatactgggcaaatcactcaagagtat
gatcaacatttgggagcagttaatacaatcacctttgtagataacaacagaagatttgtc
acatctagtgatgacaaatctctccgggtttgggaatttgggattcctgtggttataaag
tatatcagcgagcctcacatgcattctatgccatcgatttcccttcacccaaacacaaac
tggctagcagcacagagtttggacaatcagattcttatctacagcactagggaaatattt
cagcttaataagaagaaaaggtttgcagggcacattgtggctggatatgcttgccaagtc
aacttttcaccggatggtaggtttgtcatgtcgggagatggtgagggtaaatgctggttt
tgggactggaagagttgcaaagtctttagaactctcaagtgtcatgaaggggtatgcatt
ggctgtgagtggcatccattggagcaaagtaaagttgcaacttgtggctgggatggctta
atcaagtactgggactag
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integrated database retrieval system
