KEGG   Camellia sinensis (tea plant): 114278400
Entry
114278400         CDS       T07364                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03013  Nucleocytoplasmic transport
csin03015  mRNA surveillance pathway
csin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114278400
  09122 Translation
   03013 Nucleocytoplasmic transport
    114278400
   03015 mRNA surveillance pathway
    114278400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csin03019]
    114278400
   03041 Spliceosome [BR:csin03041]
    114278400
Enzymes [BR:csin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     114278400
Messenger RNA biogenesis [BR:csin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     114278400
Spliceosome [BR:csin03041]
 Complex C
  Other components
   EJC/TREX
    114278400
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    114278400
SSDB
Motif
Pfam: Helicase_C Cas3-like_C_2 DEAD ApbA YihI
Other DBs
NCBI-GeneID: 114278400
NCBI-ProteinID: XP_028076217
LinkDB
Position
Unknown
AA seq 241 aa
MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY
IKLSELEKNRKLNDLLDALDFNHVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER
LTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL
AIIFVSSASDSDVLNQVQERFEVDIKELPEQIDMSTYSSTQLVFDNLHCFIWSRQLPNEY
I
NT seq 726 nt   +upstreamnt  +downstreamnt
atgaggagagatgtgcaggagatattcaagatgactcctcatgacaaacaagttatgatg
ttttctgcaacactcagcaaggaaatccgtcctgtttgcaagaaatttatgcaagatcca
atggaaatttatgttgatgacgaggcgaaattgacccttcatggtcttgtacagcactat
atcaaattgagtgagctggagaaaaaccgcaagctgaatgaccttcttgatgcactggac
ttcaatcatgttgttatattcgtcaaaagtgtgagcagagctgctgagctgaacaaattg
ctggtggagtgtaattttccatcaatctgcatccattctggtatgtcccaggaagaaagg
ttgacacgctacaagggtttcaaggaggggcacaagaggatactcgtggcaacagatctg
gttggtaggggaatcgacattgaacgtgttaacattgtcattaactatgacatgccagat
tcagcagatacttatctgcacagggtgggtagagctggtagatttggtacgaaagggctt
gcaatcatatttgtttcgtctgcatcagattctgatgttctcaatcaggttcaggagagg
tttgaggtggatataaaggagcttcccgagcagattgatatgtctacatatagctctact
caacttgtttttgataatttgcattgcttcatttggagtagacagcttcccaacgagtac
atttga

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