Camellia sinensis (tea plant): 114280955
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Entry
114280955 CDS
T07364
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03013
Nucleocytoplasmic transport
csin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114280955
03015 mRNA surveillance pathway
114280955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114280955
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114280955
5.6.2.5 RNA 5'-3' helicase
114280955
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114280955
mRNA cycle factors
Common to processing body (P body) and stress granule
114280955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
114280955
NCBI-ProteinID:
XP_028079165
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MDSQGNNLYETASQPDTGTDAYTFLEFHTQGEDFDYPEFQELSQPIRSSVVWPTPSDSIS
DAADRADRASSDASPVSATSGGGAKGRGGGGGGGSNQAAVDALAAGMSGLNFEETVDDES
YEYSKGDFTEHACRYCGVANPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDVGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHAAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGF
SVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPA
LSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNG
LLMHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFSGGPGIVPDNFGSVASSSPN
SDRRNSRSRGSYMPSGAPNGTHKPGVHPAGYPMPRVPLPPYHGAHPSQPYAIPTRGAVHG
PVGAVPHVPQPGNRGFGAGRGSAGAPIGSHLPHQQGSQQPIGTLGSTYNFPPLENPNSQP
SVGGPLSQPGFVSNMTVQGPSQTFRDGFSMAGMSQDFLGDDFKSQGSHVPYNVAEFSTQA
SQSGYAVDYVTQGAQAGFPGSFLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFN
DPSQDDASQSHFGVANANSIQSQGLMSPLYSQPFAHYNTQPINLQATQQQQQQPQQGQSS
QNQKLHYNG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaggggaacaacctctacgagacggcatcgcagcccgacaccggcactgac
gcttacaccttcctcgaattccacacccagggcgaggacttcgactaccctgaattccaa
gagctctctcagccaattcgctcctcagttgtctggcccacgccctccgattccatctcc
gacgccgccgatcgcgctgacagagcctcctccgatgcttccccggtctccgccacctca
ggcggcggcgccaaagggaggggcggcggcggtggtggagggagtaatcaggctgcggtt
gatgctcttgctgcgggaatgagtggtttgaactttgaagagactgtggatgatgagagt
tacgagtatagtaaaggggattttacggaacatgcttgtaggtactgtggggtggctaac
ccggcttgtgttgtgaggtgtaatgtgccgtcgtgtcgcaaatggttctgtaattcacgc
gggaatacttcgggctcgcatattgttaatcatctggttcgagctaaacacaaggaagtt
tgtcttcataaagatagtcccctgggagaaacaatccttgaatgttacaattgtggttgc
cgaaatgttttccttcttggattcatctctgccaagacagagagtgttgtcgttcttttg
tgcagggagccttgtctcagtgtcaatgcattgaaggatatgaattgggacctgagtcag
tggtgtccccttattgatgatagatgttttttgcagtggctggttaaggtcccatctgaa
caggagcagttgagggcacgccaaatcagtgctcagcaaataaataaagttgaagaactt
tggaagaccaatccggatgctaccctggaagatcttgagaagcctggtgtggatgatgaa
cctcaacccgttgccttgaagtacgaagatgcatatcagtatcagaatgttttcgccccg
cttatcaagcttgaagctgactacgataaaatgatgaaagaatctcaaagcaaagacaat
gtcacgatacggtgggatgttggtctcaacaagaagcgcattgcatattttgtttttcca
aaggaagataatgagttgcgtcttgtacctggtgatgagttgcggctacgctattcagga
gatgcagctcatgcggcttggcagtcagtagggcatgtgataaaactaactgcacaagag
gaggtggctcttgagcttcgtgccagtcagggagttcctgttgatgtcaaccatggtttt
agtgtggattttgtgtggaagagcacaagttttgatcggatgcagggggcaatgaaaaat
tttgcagtggatgaaacaagtgttagtgggtacatttatcatcacttgttgggccatgaa
gttgaggttcagatggtccgtaatacattgcctcgtcgttttggtgcgcctggcctacca
gagcttaatgcatctcaagtttttgctgtaaaaagcgtccttcagaagccaataagttta
attcaaggtccacctggcacagggaaaactgtgacttctgcagcaattgtatatcatatg
gccaaacaaggccagggccaggttttggtttgtgctccaagtaatgtggccgttgaccag
ctagctgaaaagatcagtgcaacaggattgaaggttgttaggctctgtgcaaaatcaagg
gaagctgtaagttctcctgtggagcatttaactcttcactatcaggttcggcatcttgac
acatctgagaagagtgaacttcacaagttacagcaactgaaagatgaacaaggagaatta
tccagcagtgatgagaagaaatataaagctctgaagcgagcaacagagagggagatatct
cagagtgctgatgtcatttgttgcacatgtgtaggtgctggcgatcctcgattggctaat
tttagatttcgccaggtccttattgatgaatctactcaagcaactgagcctgagtgtctt
attcccttggttcttggcgtgaagcaggttgttctcgttggtgaccattgtcagcttggt
ccagtcataatgtgcaagaaagcagctcgtgctgggttagcccagtctctatttgaacgc
cttgtgctacttggtgtgaaaccaattagattgcaggttcaatatcgtatgcacccagcc
ctatcagaattcccttctaacagcttttacgaaggtacacttcaaaatggggtgaccatt
aacgaaaggcaatcaacaggcattgattttccttggcctgtgccaaatcgtccaatgttc
ttttatgttcagatgggacaagaggagataagtgctagtggaacatcctatctaaaccga
acagaggctgcaaatgttgaaaaaatagtgactacatttttaaggagtggtgtggttcct
agtcagattggggttataacaccatatgagggacaacgagcatatattgtgaactatatg
tcaagaaatggtgctctcagacaacaactttacaaggaaatagaggttgctagtgtagat
tcattccaaggaagggagaaagattacattattttgtcctgtgtaagaagtaatgaacat
cagggcattggattccttaatgatccacggaggcttaatgttgcacttactcgtgcccgt
tatggtattgtcatcttggggaaccctaaagttctaagcaaacagccgctgtggaatggt
ttattgatgcactacaaggagcacgaatgcttggtggaagggcctctgaataacttaaag
cagagtatggttcaatttcaaaagcccaaaaagatttacaacgaccgcagacttttcttc
agtggcggacctggaatcgtgcctgataattttggctctgttgcctcgtcaagtccaaat
tctgatcggagaaacagccgttcgaggggttcttatatgccatctggtgcacccaatggt
acccataagcctggggtacatcctgctggttatccgatgcctcgggttcctcttccacca
tatcacggggcccacccttcgcaaccatatgctattccaactcgcggagctgttcatgga
cctgttggagctgttcctcatgttcctcaacctggaaaccgtggttttggggctggtcgt
ggcagtgctggtgctcctattggcagtcatcttccacaccagcaaggctcccagcaacct
attggaactcttggatccacttacaactttcctcctctggagaatccaaacagccagcca
tctgttggtggaccgttatctcaacctggatttgtttctaatatgacagttcaaggacca
agccaaacatttcgtgatggtttctctatggcgggcatgtctcaggatttcttgggtgac
gatttcaaaagccagggatcacatgttccatataatgttgccgaattctccacacaggct
tcacagagtgggtatgctgttgattatgttacacaaggagcgcaggctgggttcccagga
agctttctaaaccagaattctcaggctggatattctcgctttggttcaggaaatgatttc
atgtctcaggattacatggctcatgggtcccagggtctgtttacacaagttggattcaat
gacccatcccaagacgatgcttcccagagccacttcggtgtggccaatgccaactcaatt
cagtctcagggtttgatgagtcctctctactcccagccctttgcccactacaatacacag
ccaataaacttgcaagctacacaacagcagcagcagcagccgcagcagggccagagctcc
caaaatcagaaacttcactacaacggttga
DBGET
integrated database retrieval system
