Camellia sinensis (tea plant): 114281134
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Entry
114281134 CDS
T07364
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03013
Nucleocytoplasmic transport
csin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114281134
03015 mRNA surveillance pathway
114281134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114281134
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114281134
5.6.2.5 RNA 5'-3' helicase
114281134
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114281134
mRNA cycle factors
Common to processing body (P body) and stress granule
114281134
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
114281134
NCBI-ProteinID:
XP_028079381
LinkDB
All DBs
Position
Unknown
AA seq
1273 aa
AA seq
DB search
MMDSHGNNLYDTASQPDTGNDDAYTFLEFNTQGEDFDYPEFQELSQPIRSSVWPTPSDSV
SDAAERADRASSVENNFLKAXEVTSGSGAKGRGGGGGSNQAVVDALAAGMSGLNFEETGD
DENYEYGKGDFTAHACRYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWD
LSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGV
DDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVT
HGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAP
GLPELNASQIFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHHQVRHLDTSEKSELHKLQQLKDEQ
GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP
ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRM
HPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEASNVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPDNFGSAASS
SPNSDRRNSRSRGSYMPSGPPNGTHKPGVHPAGYPMPRVPLPPYHSAPPSQPYAIPTRGA
VHGPIGAVPHVPQPGNRGFGAGRGSAGTPIGSHLPHQQGSQQPIGSIGSTFNFPPLENPN
SQPSVGGPLSQPGFVSNMTVQGPSQTFRDGFSIGGMSQDFLGDDFKSQGSHVPYNVADFS
TQASQSGYAVDYVTQGAQAGFPGSFLNQNSQGGYSRFSTGNDFLSQDYMAHGSQGLFTRV
GFNDPSQDDASQSHFGVANANPLQSQGLMNPLYSQPFAHYNTQPINLQATQQQQQQQPQQ
GQNSQNQKLHYSG
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgatggattctcacggcaacaatctctacgacacggcgtctcagcccgacaccggcaac
gacgacgcttacaccttcctcgaattcaacactcaaggcgaggactttgattatcctgaa
tttcaagagctatctcagccaattcgatcctctgtttggcccacaccctccgattctgtc
tctgatgcagctgaacgagctgatagggcctcttccgtcgaaaataactttttaaaagcc
nnagaagtcacgtccgggagcggcgccaaagggaggggcggtggcggagggagtaatcag
gcggtggttgacgcgctagcggctgggatgagtgggttgaactttgaagagactggggat
gatgagaattatgagtatggtaagggggattttacggcgcatgcttgtcgatactgtggg
gtgaccaacccggcttgtgttgtgaggtgtaatgtgccatcgtgtcgcaagtggttttgc
aattcgaggggaaacacttctgggtcacacattgttaaccatctggttcgagctaaacac
aaagaagtttgtcttcataaagatagtcccctgggagaaacaatccttgaatgttacaat
tgtggatgccgcaatgtgttccttcttggtttcatctctgcgaagacggagagtgttgtt
gttttactgtgtagggagccttgtcttagtgtcaatgcattgaaggacatgaattgggac
ctaagtcagtggtgtccccttattgatgacagatgttttctgcagtggcttgttaaggtt
ccatctgaacaagagcagttgagggcacgtcaaatcagtgctcaacaaataaacaaggtt
gaagaactttggaagactaatcctgatgctaccttggaagatcttgagaagcctggtgtg
gatgatgaacctcaacctgttgccttgaagtatgaagacgcatatcagtatcaaaatgtg
tttgcaccactaatcaaacttgaagccgactatgacaaaatgatgaaagaatctcaaagc
aaagacaatgtcacgatacgttgggatattggtctcaacaagaaacgcattgcatatttt
gtttttccgaaggaagataatgagttgcgtcttgtacctggtgatgagttgcggctacgt
tattcaggagatgcagctcatccagcttggcagtcagtaggccatgtgataaaattaact
gcacaagaggaggttgctcttgagcttcgtgccagtcagggagttcctgttgatgtgacc
catggttttagtgttgattttgtgtggaagagcacaagttttgatcggatgcaaggggca
atgaaaacttttgccgtggatgaaacaagtgttagtggctacatctatcatcacttgctg
ggacatgaagtcgaggttcagatggtccgtaatgcattgcctcgtcgttttggtgcacct
ggcctaccagagcttaatgcgtctcaaatttttgctgtaaaaagtgtccttcaaaagcca
ataagtttgattcaaggtccacctggcactggaaaaactgtgacttctgcagcaattgta
tatcatatggccaaacaaggccaggggcaggtattggtttgtgctcccagtaatgtagct
gttgatcaactggctgaaaagattagtgccacgggattgaaggttgttaggctctgtgca
aaatcaagggaagctgtaagttctcctgttgagcatttaaccctccaccatcaggttcgg
catcttgacacatctgaaaagagtgaacttcataagttacagcaactgaaagacgaacaa
ggagaattatccagtagtgatgagaaaaagtataaagctctgaagcgagcaacggagagg
gagatttctcagagcgctgatgtcatttgttgcacgtgtgttggtgctggcgatcctcga
ctggctaattttagatttcggcaggtccttattgacgagtctactcaagcaacagagccc
gagtgtcttattcccttagttctcggagtgaagcaggtggttcttgttggtgaccattgc
cagcttggtccagtcataatgtgcaagaaagcagctcgggctgggctagcccagtctcta
tttgaacgcctagtgctacttggtgtgaaaccaattagattgcaggttcaataccgtatg
catcctgccctttcggaattcccctctaacagcttttacgaaggtacacttcaaaatggg
gtgaccatcaatgaaaggcaatcatcaggcattgattttccttggcctgtgccaaaccgt
ccaatgttcttttatgttcagatgggacaagaggagataagtgctagtggaacatcgtat
ctaaaccggacagaggcttcaaatgttgaaaaaattgtgactacctttctaaggagtggt
gtggttcctagtcagattggggttattacaccatacgagggacaacgagcatatattgtg
aactatatgtcaagaaatggtgctctcagacagcaactttacaaggaaattgaggttgca
agtgtagattcattccaaggaagggagaaagattacattattttgtcttgtgtgaggagt
aatgaacatcagggcattggattccttaatgatccaaggaggcttaatgttgcactcacc
cgtgctcgttatggcattgtcatcttgggaaaccctaaagttctaagtaaacagccactg
tggaatggtttattgacacactacaaggagcacgagtgcttggtggaggggcctttgaat
aacttgaagcagagtatggttcagtttcaaaagcctaaaaagatctacaatgaccgcaga
cttttctttggtggtggacctggaattgtgcccgataattttgggtctgctgcctcatca
agtccaaattctgataggagaaacagtcgttctaggggttcgtatatgccatctggccca
cccaatggtacccataaacctggggtacatcctgctggttatcctatgcctcgggtgcct
cttccaccatatcacagtgcgcccccttcgcaaccctatgctattccaactcgtggagct
gttcatggacccattggggctgttcctcatgttcctcaacctggaaatcggggttttggg
gctgggcgtggtagtgctggtacccctattggcagtcatcttccacaccagcaaggctcc
cagcaacctattggaagtattggatccactttcaactttcctcctctggagaatccaaac
agccagccatctgttggcggaccgctatctcagcctggatttgtttctaatatgacagtt
caaggaccaagccaaacatttcgtgatggtttctctatagggggcatgtctcaggatttc
ttgggtgatgatttcaaaagccagggatcacatgttccatataatgttgctgacttctct
acacaggcttctcagagtggatatgctgttgattatgttacacagggagcccaagctggg
tttccgggaagctttctaaaccagaattctcagggtggatattctcgcttcagtacagga
aatgatttcttgtctcaggattacatggctcacggttcccagggtctgtttacacgggtt
ggattcaatgatccatcacaagatgatgcttcccagagccacttcggtgtggccaatgcc
aacccacttcagtctcagggtctgatgaatcctctgtattcccagccgtttgcccactac
aatacacagccaataaacttgcaagctacacagcagcagcaacagcagcaaccgcagcag
ggtcagaactcccagaatcagaaacttcattacagcgggtga
DBGET
integrated database retrieval system
