Camellia sinensis (tea plant): 114284216
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Entry
114284216 CDS
T07364
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114284216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114284216
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114284216
Spliceosome [BR:
csin03041
]
Complex C
Other components
Step II factors
114284216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
KH_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_19
AAA_22
HA2_C
IBR_1
ResIII
Helicase_RecD
ABC_tran
HA2_N
nSTAND3
SLFN-g3_helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
114284216
NCBI-ProteinID:
XP_028082921
LinkDB
All DBs
Position
Unknown
AA seq
1733 aa
AA seq
DB search
MRPMNRARPPTTARHGGGGCSPPIMAPRGLVHANFRPYQEWRPQFTPNNWRDRPPGCSKF
SVELRSDGRGFNKANVEALISKCKYKPEGFDVLSFGSVAARLYFRRWIDALETTVYFWEI
RLDGVHLLTPCLMPSPCDMNKLRDRLRALFTDRVLQLMEGDLVQKWQKKLGLVMKEIDGV
VALLRKLNRINVCEELLMKKAGLDSEKSLIEKRIEEFKSSMTTILNHLEGTLASCDGVEL
FRFRRPFEWVRIHCLIRRECRRLEDGLPIYACRQEILTEIYNQQVLVLIGETGSGKSTQL
VQFLADSEVAGNESIICTQPRKLAAISLAQRVQEESCGCYHDNSVISYPTYSSSQQFNSK
VIYMTDHCLLQHYMKDENLSGISCIIVDEAHERSLNTDLLLALIKNLLRQKPDLRLVIMS
ATADAHQLAEYFFGCGTFQVVGRNFPVDIIYVPCASEGTSDSANIASYASDVVRMVTEIH
RKEKDGTILAFLTSQMEAEWACEKFEDPSVVALALHGKLSYEDQRVFLDYPGKRKVIFAT
NVAETSLTIPGVKYVVDSGMVKESRFEPGTGMNVLKVCRISQSSANQRAGRAGRTEPGRC
YRLYSEYDFVLMPCHQEPEIRRVHLGVAVLRILALGMKDVQSFDFVDAPSVTAIDMAIRN
LIQLGAVVLKNDVLELTKDGLKLVRLGIEPRLGKMILQCFDNQLGKEGVVLAAVMANANS
IFCRVGNEEDKLKSDCLKVQFCHHYGDLFTLLSVYKEWESVPQEKKNKWCWENSINAKSI
RRCQDTVSEWETCLQNELNLIIPSYWRWNPQVCTELDKHLKNAILSSLAENIAMYSGYDH
LGYEVALTGKHFQLHPSCSLLIFGQRPSWVVFGDILSISNQYLVCVTAFDYEYLSTLCPP
PLFDFSKMESQKLQMRVLTGFGCTLLKKFCGKSNHNLLHLVSCIRTACMDARIAIEVNVD
QNEIRLFASSKDMEKVCSLANDILEYERKWLQNECMEKCLYHGGLGLSPSVALFGAGAEI
KHLELEKRCLTVDVFLSDVNAVDDKELLTFLERSSSGSICAVQKFTGSGQDSDEKEKWGR
ITFLTPDAAKKAAELNPVEFNGASLKIIPSRSFGGDHKMHSFAAVRAKVYWPRRCSKGFA
FVKCDRQDIDYVVNDFSNLVIGGKYVRCAASMKSADSIMLSGLDKGLSEAEILDVLRTET
GRTILDFFLVRGDSVENPPCATCEEALLREISPFMPKRNPHSNCVRVQVFPPKPKDSFMR
ALIIFDGNLHLEAAKALEKIEGKVLPGFLSWQKIKCQQLFQSSVYCPTPVYSVIKEQLHS
LLERLQHRKGAECSLVKNENGSYRVMISANATKTVAELRRPLEQLMRGKTIDHASLTPTI
LQLLFSRDGITLMKSLQRETGTYILFDRHSLSVRIFGSLKRIDMAQQKLVQSLLTLNESK
QLQIHLRGVSMPPNLMKEVVKNFGPELQGLKEKFPGAEFTLNSRRHVISISGSIESKQKV
EDIIYEIAQMSGPSAQRVDNEAGCPICLCEVEDGYRLEGCLHQFCRLCLIEQCESAIKSR
DSFPMHCMHEGCGAIILLTDLRSLLSSEKLDELFRASLGSFVASSGGNFRFCPSPDCPSV
YQVAEPGTSGKPFVCGACYVETCTRCHLEYHPFLSCEKYMEFKEDPDSSLKEWCKGKEHV
KNCPVCGYTIEKIDGCNHIECRCGRHICWVCLEFFGGSDDCYGHLRSVHQAII
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccaatgaacagagctcgtccccccaccacagccaggcacggcggcggtggctgt
tcgccgcctatcatggccccgcggggcctcgttcacgcgaatttccggccgtatcaggag
tggagaccccagttcactccgaataactggcgcgatcgccctccaggttgctccaaattc
agtgtcgagcttcgttccgatggtcgggggttcaacaaggccaatgtcgaggccttaatt
tccaaatgcaagtataaaccagagggttttgatgttctctccttcggttctgttgccgcg
agattgtattttcgccggtggattgacgcactcgaaaccactgtgtatttttgggaaatt
cgactcgatggtgttcatttgttaaccccgtgtctcatgccgagtccctgcgacatgaac
aagcttagggatcgactcagagctctcttcaccgatcgtgtcttgcaattgatggaaggg
gatttggtccagaagtggcaaaagaagctggggctcgtgatgaaggagattgacggcgtt
gtggctttgcttcgaaagcttaatcggattaatgtttgcgaagagcttttgatgaagaag
gctgggttggattctgaaaagagcttgattgagaagaggattgaagaatttaaatcttca
atgacgactattcttaatcaccttgaagggacactagcaagctgcgacggtgtggagttg
tttaggtttagaagaccatttgaatgggttaggattcattgcctgataaggagggagtgt
cgccgattggaggatggcttgccaatttatgcctgtcgtcaggaaatacttacagaaatc
tataaccaacaggtattggtattgattggagaaactggttcagggaagagtacacagttg
gttcagtttcttgctgattcagaagtagctgggaatgagtccattatatgcactcagccg
cgcaaacttgcagctatctcattggctcaaagagttcaagaggaaagttgtgggtgttat
catgataattcagtcatatcttatccaacatattcatcttcacagcagttcaattccaag
gtaatatacatgacggaccattgcttattgcagcactacatgaaagatgagaatttatct
gggatttcatgtatcattgttgatgaggctcatgaaagaagcttaaacactgatctactt
ttagcattgataaaaaatttacttcgtcagaagcctgatctgaggcttgtcataatgtct
gcaacagctgatgcacaccagcttgcagagtatttttttggttgtggaacctttcaggtg
gtgggcagaaactttccagttgatatcatatatgtcccttgtgcatctgaaggaacttct
gattctgctaatattgcctcatatgcttctgatgttgtgaggatggtgactgagatccat
agaaaagagaaagatgggacgattcttgctttcttaacttctcagatggaagcagaatgg
gcttgtgaaaagttcgaagatccctctgttgttgcattagctttacatggaaaactttcc
tatgaagatcagcgtgtctttcttgattacccaggtaaaagaaaagttatatttgccacc
aatgttgctgagacatcattgacaattccaggggtgaagtacgtggttgattctggcatg
gtgaaagagagtaggtttgaacctggtactggtatgaatgtgctcaaagtttgcaggatc
agccagagttccgcgaaccaacgagctggtcgtgctgggagaactgaaccgggaaggtgt
tatagactttattcagaatatgattttgttttgatgccttgtcatcaggaacctgagatt
cgtagggttcatcttggtgtagcagttctaaggattcttgctttgggcatgaaagatgta
cagagttttgattttgttgatgcacctagtgtgactgctattgatatggccattagaaat
cttattcaattaggagctgttgtattgaagaatgatgtgttggaattaaccaaggatgga
ctgaaattggttagattgggtatcgaacctcggctggggaaaatgattcttcaatgcttt
gacaaccaattgggtaaagagggcgttgttcttgctgctgttatggcaaatgccaatagc
atattttgcagagtcggtaatgaagaagataagcttaaatctgactgtcttaaggtgcag
ttttgccatcactatggtgacctcttcactctgctctccgtttataaggaatgggagagt
gtgccccaagaaaagaaaaataagtggtgttgggagaatagcataaatgccaaatccatt
cggagatgccaagatacagtctctgaatgggaaacatgtcttcaaaatgagcttaatctt
attattccaagctactggcgttggaatccgcaggtgtgtactgagcttgataaacatttg
aaaaatgctatactctcttcccttgcagagaacatagctatgtattcaggatatgatcac
cttggttatgaggttgcattaactggaaagcatttccagttacatccttcatgttcattg
ctaatctttggtcagaggccaagttgggtagtttttggtgatatcctatccatatccaat
cagtatttggtctgtgtaactgcttttgattacgaatatttgtctaccctttgccctcct
cctctgtttgatttctccaagatggagagtcagaagctccaaatgagggttttgaccggt
ttcggctgtacactattaaagaaattctgcggaaagtctaaccataatctccttcatctt
gtttcatgcattagaacagcttgtatggatgcacggattgccattgaagttaatgttgac
cagaatgaaattcgattatttgcctcttcaaaagacatggagaaggtttgtagcctcgca
aatgacattttggagtatgaaagaaaatggttgcagaatgaatgtatggagaaatgctta
tatcatggaggacttggtctctcaccttctgttgctttgtttggagctggtgcagagata
aagcatctggagctcgaaaagagatgtttgactgttgatgtgtttctttcagacgtgaat
gctgttgatgataaggagcttttgacatttttggagagaagtagctctggtagtatttgt
gcagtccaaaaattcacaggcagtggacaagatagtgatgagaaggaaaagtgggggagg
ataacatttcttacacctgatgctgctaagaaagctgctgagttgaatccagttgaattc
aatggtgcctcattgaagataattccttcacggagctttggaggtgatcataaaatgcac
tcatttgctgctgttagagcaaaagtttattggccacgcaggtgtagtaaggggtttgca
tttgtcaaatgtgacaggcaggatattgattatgtggttaatgatttctctaacttggta
attggaggaaagtatgtacgctgtgcagctagcatgaagtccgcagacagtattatgtta
agtggactcgataaagggctttctgaagctgaaattttagatgtattaaggactgaaact
ggtaggacaatattggactttttcttggtgagaggggactctgtagaaaatcctccatgt
gctacttgtgaagaagcacttctcagagaaatatcaccctttatgcctaagaggaacccc
cacagtaattgtgtacgagtccaggtattcccaccaaaacccaaggattctttcatgaga
gccttgatcatctttgatggaaatctacatttggaggcagcaaaagctttggagaaaatt
gaagggaaagtattacctggatttctttcatggcagaagataaagtgtcagcagttgttt
cagagttctgtatactgccctacacctgtctattctgttatcaaggagcaactgcattct
ctccttgaaagattgcagcatcgaaaaggtgctgaatgctctctcgtcaagaatgagaac
ggctcctatcgagtaatgatctctgccaatgctacaaaaactgtggctgagttgagaaga
cctctagagcagctaatgagagggaagaccatagaccatgccagcctgactcctacaatt
ctacagctgttattttcgagagatggcatcactctcatgaagtcacttcagcgagagaca
ggaacctacattctcttcgacaggcatagcctcagcgtaaggatctttgggtctttgaaa
aggattgatatggctcaacagaaattagttcagtcccttctgaccttaaatgagagcaag
caactccaaatccacctccgaggtgtatctatgccccccaatctgatgaaggaagtggtt
aaaaattttgggccggagcttcagggtctcaaagaaaagtttcccggtgcagaatttact
ctcaattcgcgccgccacgtcatttctatttctggtagcatagaatcaaagcaaaaagtt
gaagacataatctacgagattgcacagatgagtggtccttcagctcagagggttgacaat
gaagctgggtgtcccatttgcttgtgtgaagtggaggatggttaccggcttgaaggctgt
ttacatcagttctgccgattgtgcttaatagagcagtgtgagtccgccatcaaaagccga
gacagctttcctatgcactgtatgcacgagggttgtggagctataattttgcttactgac
ttgagatctctattgtcgagtgagaagttagatgaacttttcagggcctctctgggctca
tttgtggcatcaagtggaggtaatttcaggttttgcccatcacccgattgcccttcagtt
tatcaagtggcagagcccggtacgtctggaaagccattcgtctgtggggcatgttatgtg
gagacgtgtacacggtgtcacttggagtatcatccgttcctgtcgtgcgagaagtacatg
gaattcaaggaagatccagattcatcgctgaaggagtggtgcaagggaaaagaacatgtg
aagaattgccctgtctgcgggtatacaattgagaagatcgatggttgcaaccatatcgag
tgtagatgtgggaggcatatctgctgggtctgtttggaattctttgggggcagcgacgat
tgctatggccatttgaggtccgtacaccaggccattatataa
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integrated database retrieval system
