Camellia sinensis (tea plant): 114284678
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Entry
114284678 CDS
T07364
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03013
Nucleocytoplasmic transport
csin03015
mRNA surveillance pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114284678
09122 Translation
03013 Nucleocytoplasmic transport
114284678
03015 mRNA surveillance pathway
114284678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114284678
03041 Spliceosome [BR:
csin03041
]
114284678
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114284678
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114284678
Spliceosome [BR:
csin03041
]
Complex C
Other components
EJC/TREX
114284678
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114284678
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
114284678
NCBI-ProteinID:
XP_028083429
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEIRDNEAYEEELLDYEEEDEKAPDSVNAKPTGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
MCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaattagggacaacgaggcttacgaggaagagcttctcgactacgaagaggag
gacgagaaagcccctgactccgtcaacgccaaacccaccggcgaatccgtcaaaaagggc
tatgttggaattcacagttcgggattcagagatttcctgttgaaaccagagcttcttcga
gccattgtagattcaggatttgagcatccttcagaagtgcaacatgagtgcatacctcaa
gctattttaggaatggatgtcatctgtcaagcaaagtcagggatggggaaaactgctgtg
tttgttctttctactctgcagcagattgaacctgttgcaggacaagttgctgctcttgtc
atgtgtcatacgagagaattagcttaccagatctgtcatgaatttgagaggttcagtacc
tatttgcctgatattaaggttgctgtcttctacggtggtgtcaatatcaaggttcacaag
gatttactgaagaatgaatgtcctcatattgttgttggtactcctggaagaatattggct
cttgcaagagataaggaactcggcttaaagaatgtgaggcattttatccttgatgagtgt
gacaagatgctcgaatcacttgatatgaggagagatgtgcaggaaatttttaagatgact
cctcatgataaacaagttatgatgttttcagctacactcagcaaggaaattcgtccagtt
tgcaaaaagttcatgcaagatccaatggaaatttatgtggatgatgaggccaaactgact
cttcacggtctagtacagcattatattaaactgagtgagcttgagaaaaaccgcaaactt
aatgacctccttgatgcattggacttcaaccaagttgtcatctttgtcaaaagtgtcagc
agagcagctgaactgaacaagttacttgtggaatgcaactttccttctatttgcatccat
tctggaatgtctcaggaagaaaggttgacacgctacaagggttttaaggaagggcacaaa
agaattcttgtggcaactgatttagttggaagaggaattgacattgaacgtgtcaacatt
gttatcaactatgacatgcctgattccgctgacacctacctgcatcgtgtgggtagagct
ggtcgatttggcaccaaggggcttgcaattacgtttgtatcttctgcatccgactctgat
gttctcaatcaggttcaggaaaggtttgaggtggatatcaaggaacttccagagcaaatt
gatacttctacatacatgccatcgtga
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