Camellia sinensis (tea plant): 114287602
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Entry
114287602 CDS
T07364
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114287602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114287602
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114287602
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114287602
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNase_H_2
DUF4857
Motif
Other DBs
NCBI-GeneID:
114287602
NCBI-ProteinID:
XP_028086794
LinkDB
All DBs
Position
Unknown
AA seq
281 aa
AA seq
DB search
MSADEPKSKPVIIREVWSENLESEFDLIRDLIDRYPYISMDTEFPGVVFRPITTVDHGCR
MRLLPSDHYKVLKSNVDALNLIQLGLTLSDAAGNLPDLGSGHNGFIWEFNFRDFDVARDA
HALDSIDLLRRQGIDFDRNRSEGVDSARFAELMMSSGLVCNNLVSWVTFHSAYDFGYLVK
ILTRRALPSGLEDFLGILRAFFGNNVYDLKHMIRFCQSLYGGLDRVARSLEVDRVVGKCH
QAGSDSLLTWHAFQKMRDLYFVKDGPEKHAGVLYGLEIEAF
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgacgaaccaaaatcaaaaccagtcataattcgcgaagtctggtctgaaaat
ctcgagtccgaattcgatctcatccgtgacctcatcgatcgctatccttacatttctatg
gatacagagttccccggcgtcgttttccggccaatcaccacggtcgatcacggttgtcgg
atgaggctactgccgtcggatcactacaaggtcttgaaatcaaacgtcgacgctttgaat
ctcatccagttaggtcttacgctctccgacgctgccggaaacctacccgatctcggctct
ggccacaacggtttcatttgggaattcaatttccgagacttcgacgttgcgcgtgatgct
cacgctctcgattcgatcgatctgcttcgtcgccagggaattgattttgatcggaaccgg
tctgagggggtcgactcggcccggttcgccgagttgatgatgtcatcgggccttgtttgc
aacaacttggtgagttgggtgacgtttcatagcgcgtacgattttggctacctggttaag
attctcacgcgccgcgcgttgccgagtgggctcgaggactttttgggaattttgagggct
tttttcgggaacaatgtttacgatttgaagcatatgattcggttctgtcagagcttgtac
ggcggtttggaccgggtcgcgagaagtctagaggtggaccgggtggtcgggaagtgccac
caggccggttcggatagtctgttgacgtggcatgcgtttcagaagatgagagacctttac
tttgtaaaagatggaccggaaaaacatgccggtgtgttgtatggattggaaatagaggct
ttctag
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