| Entry |
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| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
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| KO |
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| Organism |
csin Camellia sinensis (tea plant)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:csin00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114287737
09124 Replication and repair
03420 Nucleotide excision repair
114287737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:csin03021]
114287737
03036 Chromosome and associated proteins [BR:csin03036]
114287737
03400 DNA repair and recombination proteins [BR:csin03400]
114287737
Enzymes [BR:csin01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114287737
Transcription machinery [BR:csin03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114287737
Chromosome and associated proteins [BR:csin03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
114287737
DNA repair and recombination proteins [BR:csin03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114287737
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
759 aa
MKFQIEDVTVYFPYDHIYPEQYSYMVELKRSLDAKGHCLLEMPTGTGKTIALLSLITSYS
LSKPSNPVKLLYCTRTVHEMEKTLAELRFLHRYQLQHLGPSARILALGLSSRKNLCINPS
VVSAAENRDSVDAACRKLTASWVRSLAVENPNIPTCSFFEDYEKAASNAVLPPGVYTLQD
LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNI
DNVCIEALSVSVRSQTLEGATRNLNKMSHEIERFKATDAGRLRAEYNRLVEGLAQRGNLP
IADTWLSNPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLKGRLQTENVEKEGPVTFVA
SINAQVGIDQKVLRFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIE
PFDERMPNIPDPVLQLSCHDASLAIKPVFERFQTVVITSGTLSPIDLYPRLLNFNPVVSR
SFTMSLTRDCICPMVLTRGSDQLPVSTKYDMRTDEGVERNYGRLLLEMVSIVPDGIVCFF
VSYSYMDGIVNSWNEKGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV
ARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILIARLEYLRETFQIKEGDFLTFDALRQ
AAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAMHIARE
FLRKMAQPYDKSGGSGKKTLLSQEDLEKMGNGSLGEMLF |
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| NT seq |
2280 nt +upstreamnt +downstreamnt
atgaagtttcagatagaagacgtaacagtatacttcccatacgatcacatatacccagaa
caatactcctacatggttgaactcaaacgatccctcgacgccaaaggccattgtcttctc
gagatgcccaccggcactggtaaaaccatcgctctcctctctctcatcaccagctactct
ctctctaaaccctccaacccagtcaagctcctctactgcactcgcaccgtccacgagatg
gagaaaaccctagccgagctccgcttcctccaccgctaccagctccaacacctcggcccc
tccgcccgcattctcgccctcggcctctcttctcgcaagaacctctgcattaatccctcc
gttgtctctgctgccgagaatcgggattctgttgatgctgcttgccgcaaacttactgcc
agttgggtccgctcgctggctgttgaaaaccctaatattcccacttgttcgttttttgag
gattatgagaaggctgcttctaatgcggtcttgccccctggtgtctacaccttgcaggat
ttgagggcgtttgggaaggagaaagggtggtgtccgtactttttagcgcgccatatggtg
cagtttgcaaatgttgtggtttatagttaccagtacttgcttgacccgaaggttgctggg
atcatatcgaaggaaatgcagagggagtcagttgtggtgttcgatgaggcacataatatt
gacaatgtgtgtattgaagcacttagtgtcagtgtgaggagccagaccctagaaggggca
acaaggaatctcaataagatgtctcatgagattgaaaggtttaaggccactgatgcaggc
agattgcgtgcagaatacaaccggcttgttgaaggtttggcacaaagagggaacctacct
atcgcagatacgtggctctcaaatcctgctttgcccgatgatattctcaaggaggcagtt
cctggaaacatacgccgggcagagcatttcctatctgttttacgcagattagtacaatat
cttaaagggcgtctgcaaactgagaatgttgaaaaggagggacctgttacctttgtggcc
tctataaatgcacaagttgggatcgaccagaaagtactgagattttgttatgaccgcctg
cactcactgatgatgacactagagataaccgacacagatgaatttttacatattcaaaca
atttgtgactttgcaacactcgtggggacatacactcgggggttctcaattataattgaa
ccttttgatgagagaatgccaaatatcccggatcccgtattgcagcttagctgccatgat
gcttctcttgccataaagcctgtatttgaacgatttcagacagttgtcattacttctgga
actctaagccctattgatctctaccctcgccttcttaatttcaatccggttgttagccga
agttttacgatgtccttgacaagggattgtatatgcccaatggttctgacccgtggaagt
gatcagcttcctgttagcacaaaatatgatatgagaactgacgaaggtgtagaaagaaat
tatgggaggcttttgctggagatggtgtctattgttccagatgggatagtgtgttttttt
gtcagttactcgtatatggatggaatagtcaacagttggaatgaaaagggtattttgaag
gaaataatgcaacataagcttgtctttattgagactcaggatgtggtggaaactacactg
gctcttgataactatcgcaaagcttgtgattgtgggcggggtgctgtctttttctctgtt
gccaggggaaaagtggcagaaggtattgattttgatagacattatggcagacttgttatc
atgtttggggtcccttttcagtatacattaagcagaatattgattgcacgtttggagtat
ttaagggagactttccagataaaggaaggcgattttctgacttttgacgctctgagacaa
gctgctcaatgtgtggggcgagttatccgttcaaaggcagattatgggatgatgattttt
gctgacaaaaggtacagccgtcatgacaaacgttctaaattgcctggatggatactgtca
catttacgtgatgctcacctaaacttgagtactgatatggctatgcatatagcacgagag
tttttacggaagatggcacaaccatatgataagagtggcggtagtggtaagaaaacccta
ttgtcacaagaagacttggagaagatgggcaatggcagtcttggggagatgttgttttaa |
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