KEGG   Camellia sinensis (tea plant): 114288448
Entry
114288448         CDS       T07364                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03030  DNA replication
csin03410  Base excision repair
csin03420  Nucleotide excision repair
csin03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114288448
   03410 Base excision repair
    114288448
   03420 Nucleotide excision repair
    114288448
   03430 Mismatch repair
    114288448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csin03032]
    114288448
   03036 Chromosome and associated proteins [BR:csin03036]
    114288448
   03400 DNA repair and recombination proteins [BR:csin03400]
    114288448
DNA replication proteins [BR:csin03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    114288448
  DNA Replication Termination Factors
   ELG1-RFC complex
    114288448
Chromosome and associated proteins [BR:csin03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    114288448
DNA repair and recombination proteins [BR:csin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     114288448
  Check point factors
   HRAD17(Rad24)-RFC complex
    114288448
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_11 AAA_16 Mg_chelatase AAA_5 AAA_assoc_2 AAA_14 ResIII AAA_24 AAA_2 nSTAND3 PhoH SLFN-g3_helicase DUF3853 DNAX_ATPase_lid AAA_28 AAA_7 AAA_19 AAA_30 CPG4 RNA_helicase NPHP3_N Parvo_NS1 AAA_25 T2SSE IstB_IS21 TIP49 bpMoxR DUF815 AAA_18 NB-ARC Cdc6_lid
Other DBs
NCBI-GeneID: 114288448
NCBI-ProteinID: XP_028087753
LinkDB
Position
Unknown
AA seq 341 aa
MAPLVHSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGRQGGYPCPPFKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMTS
RILHICNEEGLNLDTEALSMLSSISQGDLRRAITYLQGAARLFGSSISSNDLISVSGVIP
QEVVQAFFSACKSGNFDLANKEVNNVIAEGYPVSQMLSQLFDIVVEADGVSDEQKAKICK
KLGEVDKCLVDGADEYLQLLDVASNTMRVLCNMPLEFSYEN
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccactcgtacacagctcccagccatgggtcgagaaatatcgacccaagcaagtg
aaggacgtagctcaccaggacgaagtcgttcgtgttctcacaaacaccctcgagacctct
aattgcccgcatatgctgttctatggtcctcccggaacaggcaaaaccacaacagcgctt
gccatagcgcaccagctttttggacctgaactctacaaatctagagtgctggagctgaat
gcaagtgatgaccgtgggatcaatgtagttcgcacaaaaataaagaactttgctgctgtt
gctgtaggttctggacgtcaagggggttatccttgcccaccttttaagataattatccta
gacgaggcagattccatgactgaagatgctcagaatgctttgcggcgtaccatggaaaca
tactctaaagtcacaagattctttttcatttgtaattacataagcaggattatagagccg
cttgcttctagatgtgcaaagtttaggttcaaaccactttcagaagaaatcatgaccagt
cgtatattgcatatttgtaatgaggaaggcttaaatctggatacagaggctctttcaatg
ttaagttccatctcacagggcgatcttcgtcgggctataacatacttacagggagctgct
cgcctctttggatcatctatttcttccaatgacttgatcagtgtgtcaggggtcatccct
caggaggttgttcaggcttttttttcagcttgcaaaagtggtaattttgacttggcaaat
aaggaagtcaataatgtaattgcagagggatatccagtttctcagatgctttctcagttg
tttgacatagttgtcgaagcagatggtgtatcagatgaacagaaagcaaaaatatgcaag
aaattgggtgaagtggataagtgtcttgttgatggagcagatgagtatttgcagctgttg
gatgtggccagcaatactatgcgagtactttgcaacatgccgctagaattttcatacgag
aattag

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