Camellia sinensis (tea plant): 114288542
Help
Entry
114288542 CDS
T07364
Name
(RefSeq) LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114288542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114288542
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114288542
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114288542
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
114288542
NCBI-ProteinID:
XP_028087864
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MPGTLASRNSTINNVPSSGVQQXTVSLSSGRFASNNLPVALSQISHGSSHGHSGVANRGG
MSVVGSPGFSSSANGVGGSIPGILPTSAAISNRSAVPGLGVSPILGNAGPRITSSMGNIV
GGCNIGRSMNSGGGLSVPGLASRLNMSANSASGNLSVQGPNRLMSGVLQQASPQVISVLG
NSYQTGGPLSQSHVQVVNNLNSMGMLNDVNSNDGSPFEINDFPQLTSRPSSAGGPQGQLG
SLRKQGLGVSPIVQQNREFCIQNEDFPAVPGFKGGNANYAMDLHXKEQLHDNTVSMMQSQ
HLQMGRSAGFNLGGSYSLHRPQQQQQHAPSVSSSGISFSAINNQDLLHLHGSDMFQLSHS
NYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQSHSQFRLQQMSGVNQSYRDQ
GVKSMQAPXAAPDPFGLLGLFSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSP
WSDEPAKGDPEFSVPQCYYAKQPPILNQSYFMKFPMDTLFYIFYSMPKDEAQLCAAYELY
NRGWFYHRELRLWFTRVSNVEPLVKTNTYKRGSYICFDPNAWETIRKDNFVVHYDMLEKR
PALPQH
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcacacttgcatctagaaactctacaataaataatgttccttctagtggggtt
caacagnctactgtaagcctttctagcggacgttttgcatcaaacaatctccctgttgct
ctttctcagatatcccatggaagctcacatggtcattcaggggtggcaaatagaggtgga
atgagtgttgttggtagccctggatttagtagtagtgcaaatggagttggtggttccatt
cctgggattctgccaacctctgcagcaattagtaatcggagtgctgttccaggactagga
gtgtctccaattttgggaaatgcaggtcctcggattaccagctcaatggggaacatagtt
ggtgggtgcaacattggtaggagcatgaactctggaggaggattatctgtgcctggtctt
gcttctcgcctaaatatgtctgccaacagtgcttctggaaatttaagtgtgcaaggtcca
aacagactaatgagtggtgtgcttcaacaagcttctccgcaggtgatttctgtactggga
aattcctaccaaactggtggcccactatcgcaaagtcatgtccaagttgtcaataatctt
aattctatgggaatgttgaatgatgtaaattccaatgatggttctccctttgaaataaat
gatttccctcagctgaccagccgccccagttctgctggaggtcctcaaggacaattgggt
tcgcttcgtaaacaaggtcttggtgttagtcctattgttcagcaaaatcgagagttctgc
atccaaaatgaagattttccagctgtaccaggatttaaaggtggcaatgctaattatgcg
atggacttgcattagaaagaacaacttcatgacaataccgtgtccatgatgcagtctcag
cacttgcaaatggggaggtctgctggatttaacttgggaggatcatattcattgcatcgt
ccacagcagcaacagcaacatgcaccatcggtcagtagcagtggtatctccttttcagcc
ataaacaaccaggatcttctccatctgcatggctcagatatgttccaattgtctcattca
aactatcactcgcagactagtggaccgcctggcataggattaagacctctgaactctccg
aatacagtttctggtatggggtcttatgaccagcttatccaacagtatcagcagcaccag
agtcattcccagtttcgcctgcagcaaatgtctggtgtaaatcagtcatacagggatcag
ggtgtgaagtccatgcaagctccataagctgcgcccgatccatttggcttgcttggtttg
tttagtgtaataaggatgagtgatcctgatctgacatcgcttgcacttggaattgatctg
acaacacttgggttgaacttgaactcgactgaaaatcttcacaagacatttggatcccca
tggtcagatgagcctgctaagggtgatccagagttcagtgtgcctcaatgctattatgct
aaacaaccgcctattttaaatcaatcgtattttatgaagttcccaatggacacattgttt
tacatcttttacagcatgccaaaagacgaagcccagttatgtgctgcatatgaactatac
aacagaggttggttttatcacagagagcttcgtctctggtttacgagggtttccaacgtg
gaaccacttgttaagacaaacacatataagagagggtcttatatctgtttcgacccaaac
gcatgggaaacaatccgcaaggataattttgtcgttcactatgacatgttggaaaaaaga
ccagctctaccccaacattaa
DBGET
integrated database retrieval system
