Camellia sinensis (tea plant): 114288563
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Entry
114288563 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114288563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114288563
03012 Translation factors [BR:
csin03012
]
114288563
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114288563
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114288563
Translation factors [BR:
csin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114288563
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
NACHT
Motif
Other DBs
NCBI-GeneID:
114288563
NCBI-ProteinID:
XP_028087893
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MSLHFLSTPTHCAFLYKTLSTSRFRILISTTSMSYRPNFQGGRRGGGPAGRGGGGRGGGG
GGGGGRGRGRGRGEQRWWDPVWRAERLGQKAAEMEVMDKNEWWGKMEQMKRGGEQEMIIK
RHYSRGDQQILSDMAYELGLYFHAYNKGQTLVVSKVPLPNYRADLDERHGSTQKEIRMST
EIERKVGNLLDSSKGSVSVDNVPGASSQIAKQSVPNVDILQPVSVLEIDTGNERLSVELK
ERQEKMKARDSGKAMRSFRERLPAFKVKSEFLKAVAANQVLVVSGETGCGKTTQLPQFIL
EDEISSLRGANCNIMCTQPRRISAISVAARISSERGESLGESVGYQIRLESKCSAQTRLL
FCTTGVLLRKLVQDPVLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT
INAELFSKYFGNAPTIHIPGLTFPVAELFLEDVLEKTHYSIKSEFDNFRGSSRRRRQQES
KKDPMTELFEDVDIDSHYKSYNTTTRQSLEAWSGSQLDLGLVESTIEHICRREGDGAILV
FLTGWDDISKLLEKIKANSLLRDPSKFLVLPLHGSMPTINQREIFDRPPANVRKIVLATN
IAESSITIDDVIYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCY
RLYPKLIHDAMPQYQLPEILRTPLQELCLHIKSLQLGVIGSFLAKALQPPDALSVQNAIE
LLKTIGALDDNEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIASALAHRDPFV
LPINRKEEADDAKRSFAGDSCSDHIALLKAFDEWKDAKHYGKEKAFCWENFLSPVTLQMM
EDMRSQFLDLLSGIGFVDKSRGPNAYNQYSNDLEMVSAILCAGLYPNVVQCKRRGKRTAF
YTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIRDSTNISDYALLMFGGNLIP
SKTGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLNRKIEEPGLDVSVEGKGVVAAVV
ELLHSQSVQY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcattttctcagcactcccacacactgcgccttcctctacaagactctctcc
actagtaggtttcgtattctgatctccacaacctccatgtcttacaggcccaacttccaa
ggcggccgtcgcggcggaggccccgccggtcgcggaggtggtggccgcggtggcggtggc
ggtggcggtggcggacgaggacgaggacgaggacgcggcgagcagcggtggtgggaccct
gtctggcgagccgagcgtctgggccaaaaagcagctgagatggaggttatggataagaat
gagtggtggggtaaaatggagcagatgaagagaggcggagaacaggagatgataatcaag
cgtcattacagtcgaggggaccagcaaattttgtctgatatggcttacgaattagggctt
tacttccatgcgtataacaaagggcagacacttgttgtgagcaaagttccattgccgaat
taccgtgcagatcttgatgaacgtcatggatccacacagaaagagatacgaatgtctaca
gaaattgagagaaaagttgggaatctattggatagctcaaaagggtcagtttctgtagat
aatgtccctggtgcatcctctcagattgccaaacagtcagtgcccaatgtagatatttta
caaccagtctctgtgttggagattgatactggcaacgagagacttagtgttgaactcaaa
gaaagacaagagaaaatgaaggcccgtgacagcggaaaggcaatgcgctcgttcagagaa
aggctgcctgcattcaaagtgaaatctgagtttttaaaagctgttgccgcaaatcaggta
ttggtagtttctggagagacaggctgtggcaaaactacacaactccctcaattcattctt
gaggatgagatttcatctcttcgtggtgccaattgcaacataatgtgcactcaacctcgt
cgtatatcagcaatttctgttgcagctcgaatatcctctgaaaggggagagagtcttggt
gaaagtgttggttaccagatccgtctggaatcaaaatgctcagctcaaacacggttgcta
ttttgcaccactggagtgttgcttcgaaagctggttcaggaccctgttttaactggagtt
agccatttgctagtggatgaaatccatgaaagaggcatgaatgaggactttctcttaata
attttgcgtgaccttcttcctcgtcgtccagatctccgtcttattctaatgagtgcgacc
attaatgctgaattattctccaaatactttggaaatgccccgactattcatatcccgggc
ctcacgttccctgtggcagagttgtttcttgaagacgtgttggagaaaactcattacagt
atcaaatcagaatttgacaactttcgagggagttcaaggaggaggagacaacaagagtct
aagaaagatcctatgactgaattgtttgaggatgttgacattgattctcactacaaaagc
tacaacacgactactagacaatctcttgaagcttggtcgggctcgcaacttgatttgggt
cttgtggaatcaacaatagaacacatctgtcgtcgtgaaggtgatggagccattcttgta
ttcctcactggttgggatgacatttctaagctgcttgaaaaaattaaagcaaacagttta
cttagagatcccagcaagtttcttgttcttcctcttcatggttcaatgcctaccatcaat
caacgtgaaatatttgatcgcccacctgccaatgtgagaaaaattgtgctagcgacaaac
attgctgagagtagtataaccatagatgatgttatatatgtcatagattgtggaaaggca
aaggagactagttatgatgctctaaacaagctggcttgtctgttgccatcatggatctca
aaggcctcagcacatcagagacgtggtcgtgcgggtcgtgtgcaacctggagtttgttat
agattgtatccaaaattgatccacgatgcgatgccccagtatcaactgcctgaaattctt
cgaacacctttgcaagagctatgcctgcatattaaaagtttgcagcttggagtcattgga
tcatttttagcgaaggcacttcagcctccagatgccctctccgttcaaaatgcgattgaa
cttcttaaaacaattggggctctagatgataatgaagagctcactccacttggtcgccac
ctgtgcactctgcctttggacccaaatattggaaagatgcttctcatgggttcaatcttt
caatgccttaatcctgcattaacaattgcttctgctctggcacaccgtgatccatttgtc
ctcccaataaataggaaagaggaagctgatgatgcaaagagatcctttgctggtgattct
tgcagcgatcacattgcgcttctcaaagcatttgacgaatggaaggatgcaaaacattat
ggaaaggaaaaagccttctgttgggaaaattttctatctcctgtaacattacagatgatg
gaggatatgagaagccagtttctggatctattgtcaggaattggctttgtagataaatcc
agaggtcctaatgcttataaccaatatagtaatgatttggagatggtatctgcaatcctt
tgtgctgggctctacccgaatgttgtgcagtgtaaaagaagaggaaagcggaccgcgttc
tacactaaagaagtcgggaaagttgacatccatcctgcatctgtaaatgctggtgttcat
cttttccctcttccttacatggtttatagcgaaaaggtgaagacaaccagcatatatata
agagattccacaaatatatcagactatgctctacttatgttcggtggtaatctcattcct
agcaaaactggtgaaggtattgaaatgcttggagggtaccttcatttctccgcttcaaag
agcgtgttggagttgatacggaaattgcgaggggagcttgacaagcttctgaataggaag
attgaggaacccgggctggatgtctctgtcgagggaaagggagtggttgctgctgtggtt
gagttactgcatagtcagagtgtacagtattga
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