Camellia sinensis (tea plant): 114289991
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Entry
114289991 CDS
T07364
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
csin
Camellia sinensis (tea plant)
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csin03036
]
114289991
Chromosome and associated proteins [BR:
csin03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114289991
microRNA pathway
RISC loading complex
114289991
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
dsrm
SWI2_SNF2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
114289991
NCBI-ProteinID:
XP_028089643
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MHSPDEAEAVKPLKRSFEIMNSKQSDPIEMDIAPPPSTTTSSSLTPHNFRPRGYQLKVFE
VAMRRNTIAVLETGAGKTMIAVMIINDMAPSLNLVPPHKNIIVFLAPTVHLVHQQFEVMK
VHTNLQVEEYYGAKGVDEWNAKSWEKEINDHDVLVLTPQILLDALRKAFVSFEMVCLMII
DECHRATGNHPYTKIMKEFYHKSRNKPKIFGMTASPVIRKGVSSLTDCEEQISELEGILD
SQIYTVEDRTELEEIIPSAEEICRFYDPAVSLNMDLKAKLESSWKKFDALLLELQGSISS
QYRDTEDKYTALRKRLSNDNAKILYCLDDLGLLCAYEAVKVCIENSSNATAECEYYRKSS
LQCKYFLEEVLSTMTASLPHGTWFGNKNLLGIGSDCSKTVAMGYISPKLYELFQIFQSFG
EARQVLCLIFVERIITAKVIERVMKRTDYLSHLTVSYLTGSNSSVDALAPKVQKETLESF
RSGKVNLLFATDVVEEGIHVPNCSSVIRFDLPKTVRSYVQSRGRARQNDSHFVMMLERGN
IKQRDHIFDIIRSEYSMTDTAINRDPDASVLKACTIKEIDAYYVDATGASVTVDSSVNLI
HRYCEKLPRDEYFTPKPIFQFILSGESYQCNLTLPPNAAFQTLVGPPSRNSHLSKQLVCF
DACKKLHQMGALNDHLLPFNEEPSVNDSTLKSKRSTSSAGTTKRKELHGTTCVHALSGTW
GLKPDGTVFQAYRIHFTCNIPGVHYSSFVLLIDSKLDDDVGNVEMELFLLSKFVKSSVSS
CGEIHLDAEQVVRAMCFQEFFFNGIFGKLFVRLKSSRGGRKFLLQGESLWEPSNMYLLLP
LESSNVSSDEPWRINWMGINSCVSVVEFLKENAWLSAEQSSGDRGNSSVHGTNSIESECK
ATNVIHLANKSIGTKNLREMVVLAIHTGRIYSVLRAVDNTSAESPFDGNSDAIPSSYSSF
AEYFSKKYGITLMHPGQPLLLLKQSHNAHNLLVDFRNEAGASFGKNLEAVNKMAVEKPRN
HVHMPPELLVSIDVPINVLKSFYLLPSLMYRLESLMLASQLREEIACHSSNIRIPSSLIL
EAITTLRCNEVFSMERLELLGDSVLKYSVSCHLFLKYPKKHEGQLSARRSWAVCNSTLHK
LGTDRNLQGYIRDGAFEPRRWIAPGQRSIHPCPCSCGVDTLEVPLDIKFQTEDAKVVGKC
CDRGHRWMGSKTISDCVEALIGAYYVGGGLTAALQLMKWLGVDAELEPSLVDEAIKVASL
HSYIPKAKEIETLESKLGYEFSIRGLLLEAITHASEQELGVGYCYQRLEFLGDSVLDILI
TWHLYQSHTDIDPGELTDLRSASVNNENFANVAVKKNLYQHLQHRSGLLLNQITEYVKFI
SGSQRTTQPLQGGKGLKTLGDLVESIAGAILIDTKLNLDEVWRIFEPLLSPIVTPDKLEL
PPLRELIELCDSLGYFIKENCIKKGGMVHAELRLQLKDVLLVGEGLGHNRKVAKGQAALH
LLKDLESRGISYSKRRKQCPDGVGVQSTLHLDNNICSQTNADPSQPKAQKKQKTTVTQLD
SVPNKNPYHSDDCSSKSCDIPVLSSINMKKGGPRTALYDLCKRLQWPMPTFKSTENKSRT
PIEFCEGSERRTGFNSYASTITLTIPDSGVIELSGDQRADKKSSFDSAALLMLYELQGRE
NSSLV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcattccccagacgaagcagaggcagtgaagcctctgaagagaagctttgaaatcatg
aattcaaagcaatctgatcctatagagatggacattgctcctcctccttctactactact
agttcttctctcactccgcacaacttccgacccagagggtatcaattgaaggtttttgaa
gttgcaatgcggagaaacacaatcgccgtcttagaaaccggtgctgggaagactatgatt
gctgtcatgatcatcaatgacatggctccatctctcaacctagttccccctcataaaaat
attattgtattcttggctcccactgttcaccttgttcaccagcaatttgaagttatgaag
gttcacacaaatcttcaagtggaagaatactatggagccaagggggtggatgagtggaat
gctaagtcctgggaaaaggaaattaatgaccatgatgtattggttttgacaccccagatt
ttattggatgccctgaggaaggcatttgtgagttttgaaatggtatgcttaatgataatt
gatgaatgccatcgtgctactggtaaccatccttacacaaaaattatgaaggaattttat
cacaaatctagaaacaagccaaagatttttggaatgacagcctcccctgtaataagaaaa
ggtgtctcatccctcacggattgtgaggagcaaatatcagaacttgaaggcatcttggat
tcccagatttatacagtagaagacaggacagaactggaagaaatcatcccctctgcagaa
gaaatctgtagattctatgatccagcagtgtctttgaatatggatttgaaagcaaagctg
gaatcatcatggaagaagtttgatgctttgttgcttgagttgcaaggttcaatttcaagt
caatatagagatacggaagataagtacacggcactgagaaagcggctgtccaatgacaat
gcaaagatcttgtattgcctcgatgatcttggcctcctatgtgcttatgaggctgttaaa
gtttgtatagagaattcctctaatgcaactgcagaatgtgaatattatagaaaaagttct
ttgcagtgtaaatattttcttgaggaggttttatcgacaatgaccgcatcattgccacat
ggtacatggtttggcaataaaaatcttttgggaatcggatctgattgttcaaaaacagta
gctatgggatacatatctccaaagttatacgaactctttcaaatttttcaatcatttgga
gaagccaggcaagtgctgtgcctcattttcgttgaaagaattataacagctaaagtcatt
gaaagagtcatgaagagaacagattatttatctcatttgacggtttcctatttgaccgga
agcaattcatcagttgatgccttggcgccaaaagtgcagaaagaaactctggaatcattt
cgctctggaaaggttaacctattatttgctactgatgtggttgaagagggaattcatgtt
ccaaactgttcttctgtcatacgctttgacctgccgaagacagttcgcagctatgttcaa
tctcgtggtcgagctcgtcaaaacgactcccattttgtcatgatgcttgagagggggaac
ataaagcaaagagatcatatatttgatatcattaggagtgaatactctatgacagataca
gctataaatagagaccctgacgccagcgttttaaaagcatgtaccatcaaggaaatagat
gcatattatgtggatgcgactggagcatcagtaactgtggattctagtgtcaacctcatt
catcgatattgtgaaaagcttcctagagatgagtacttcactccaaagcccatttttcag
ttcatattgtctggagagtcatatcagtgcaatctgacgttacctccaaatgcagctttt
cagactttagttggtcctccaagcaggaattctcatttatcaaagcagcttgtgtgcttt
gatgcgtgtaagaaattacatcagatgggtgctcttaatgatcatcttcttccttttaat
gaagagccttcagtaaatgattccactttaaagagcaaaagatcaacttcaagtgcagga
acaacaaaaaggaaggaattgcatgggacaacctgtgtccatgcactctctggaacatgg
ggattaaaacccgatggcactgtttttcaagcttatagaatacattttacttgtaatata
cctggtgtgcattactctagttttgttcttttgattgactcaaagctagatgatgatgtg
ggaaatgttgaaatggaacttttcttactttcgaagtttgtgaaatcttcggtttcttca
tgcggcgaaatacatctagatgcagaacaggtggtgcgagcaatgtgctttcaagaattt
ttttttaatgggatatttgggaaattgtttgttcgattgaaatcatcaagaggaggaaga
aaatttctactgcaaggggaatcgctatgggaaccatcaaacatgtaccttctcctacca
ctggagtcatcaaatgtctctagtgatgaaccttggagaattaattggatgggaatcaat
tcttgtgtttctgtggtagaatttttgaaagaaaatgcttggttaagcgctgagcaatct
agtggtgataggggaaattcatcagttcatggcacgaactcaattgagtctgaatgcaaa
gccacaaatgtcatccacctggccaataaatcaattggtaccaaaaacctcagggagatg
gtggttttggcaattcacacagggagaatttactctgtcttacgtgccgttgataataca
tctgctgagagtccttttgatgggaactctgatgcaatcccttctagttattcatccttt
gcagagtactttagcaaaaagtatgggattacactaatgcatcctggacagcctttgcta
ctgctaaagcaaagtcacaatgcacacaaccttcttgtggattttaggaatgaagcaggt
gcttcatttggaaagaatttggaagcagtcaataaaatggctgttgaaaaaccccgaaat
catgtgcacatgccacctgaacttctagtcagtattgatgtaccaataaatgttctgaaa
tcattttacttgctaccatcattaatgtaccgactggagtccctgatgttggccagccag
cttagagaagagattgcgtgtcattctagcaatattcggatacctagctcattgattctg
gaagccatcacaactcttagatgtaatgaagttttttccatggagcgcttggagttgctg
ggagactcagttttgaagtattctgtgagctgccacctctttcttaaatatcccaagaag
catgaaggacaattatctgctagacgctcatgggctgtttgcaattcaaccctacataaa
ttgggaactgatcgcaacttacaggggtatatacgagacggtgcatttgaaccccgtcga
tggattgctccaggacagcgttctatacacccttgtccttgttcttgtggggtggatact
ttagaggtgcctctcgacatcaaatttcaaactgaagatgctaaagttgttgggaagtgc
tgtgacaggggtcataggtggatgggttcaaaaaccatatctgattgtgttgaagccctc
ataggagcctactatgttggtggtggattgactgcagctcttcaattgatgaaatggctt
ggtgttgatgctgagcttgagccgtcactagtagatgaagccataaaagttgcatctctc
cactcctacattccaaaagctaaagagattgaaactctagagtcaaagcttgggtatgag
ttctctatcaggggtctgttactagaggcgataacacatgcatctgagcaagaacttggg
gttggctactgttaccagaggcttgaatttcttggtgactctgtgttggacatacttatt
acatggcatttgtaccaaagtcatactgatattgatccaggagagttgaccgacttacgt
tcggcctctgttaacaacgaaaattttgctaatgttgctgtgaaaaagaacctttaccag
caccttcaacatcgctctggattacttttaaatcaaataacagagtatgtgaagtttatt
tctggttctcaaagaaccactcagcccttgcaaggtgggaagggtcttaagactcttgga
gacttggtggaaagtattgcaggggcaatacttattgataccaagctcaatcttgatgaa
gtgtggagaatttttgaacctctgttgtctccaattgtgacccctgataaacttgaactg
cctcctttgcgtgaacttattgaattatgcgactctcttgggtactttataaaagaaaat
tgtattaaaaagggaggaatggtgcatgcagagcttagattacagctgaaagacgtctta
ctggttggagaaggacttgggcacaatagaaaagttgcaaagggacaagcagctcttcat
ttgttgaaggacctggagagtagaggaatttcatactccaaaaggagaaaacaatgtcct
gatggagttggtgttcagtctaccctgcacctggataataatatctgcagccaaacaaac
gctgatccttcacagccaaaagcccagaaaaaacaaaagacaaccgtaactcagttggat
tcagtgccgaataaaaatccttaccatagcgatgactgttctagcaaatcttgtgacatc
ccagttctttcatcaattaacatgaagaaaggaggacctcgaacagccctttatgacctt
tgcaagagactgcagtggcccatgcctacctttaaatcaacagagaacaaatcaagaact
cccattgaattttgtgaaggatctgaaaggaggacaggttttaacagttatgcatctaca
ataaccttgaccatacctgactctggtgtcattgaactaagtggtgaccaaagagcggat
aaaaagagttcttttgactctgcagcactccttatgctttatgaacttcaaggcagggaa
aactcatcattggtgtga
DBGET
integrated database retrieval system
