Camellia sinensis (tea plant): 114290607
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Entry
114290607 CDS
T07364
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114290607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114290607
03041 Spliceosome [BR:
csin03041
]
114290607
03009 Ribosome biogenesis [BR:
csin03009
]
114290607
03016 Transfer RNA biogenesis [BR:
csin03016
]
114290607
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114290607
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114290607
Spliceosome [BR:
csin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114290607
Complex C
U4/U6.U5 tri-SnRNP related factors
114290607
Ribosome biogenesis [BR:
csin03009
]
Eukaryotic type
Pre-60S particles
Helicases
114290607
Transfer RNA biogenesis [BR:
csin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114290607
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
114290607
NCBI-ProteinID:
XP_028090340
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MGLMKRKSLEGPSEESGPPSKQQRENDLIITDESVACVHDVSYPEGYVPCSNLSLAQEDS
KRAKEFPFKLDPFQSEAINCLDSGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSP
IKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWVI
FEEVHYICVDKGRGXVGEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYVFPSGGDGLYLVVDENGKFREDSFQKALNALVPSNEGDRKRENGKWKKNL
VVGKAGEESDIFKMVKMIIQRQYDPVILFSFSKRECETLAMQMAKMDLNVDDEKVTIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDEKL
EPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDLEK
QRKDLEKERDSIVIEEEDSLENYYSLLEQYKSLKKDVRDIVFAPRYCLPFLQPGRLVSIQ
CTKSDETSSSFSIKDQVTWGVIINFERVKGRSEDDANRKPEDANYTVDVLTKCAVRKDEV
GKKTIKIIPLKERGEPVVVSVPISQVDSLSSVRLMIPKDLLPLEARENTLKKVSEVLSRF
AKEGMPLLDPEEDMKVQSSSYRKAVRRIEALENLFEKHEIAKSPLIEQKLKVLHMKKELT
AKIKLIKRTIRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSADELTLT
ELMFNGVFKDIKVEEMVSLLSCFVWQEKLQDAQKPRDEHEFLFTQLQDTARRVAKVQLES
KVQIDVENFVSSFRSDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIQ
AAKSIGETELEAKFEDAVSKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggattaatgaagagaaaatcactagaaggcccatctgaggaatctggccctccatcg
aaacagcagagggagaatgatttaatcatcacagatgaatctgtagcatgtgtacacgat
gtgtcatatcctgagggttatgttccttgttcaaatctctcattggctcaagaagattca
aaacgagcaaaggaattccctttcaaactcgacccttttcagtccgaagcaatcaattgc
cttgatagtggtgaatctgtcatggtatcagctcatacatcagcagggaaaactgttgtt
gcactttatgccattgctatgtcattgcggaacaagcaacgggtgatatacacgtcacca
atcaaagcactcagcaatcagaaatatagggagtttaaagaagaattttcagatgtgggt
ttgatgaccggagatgtcaccatcgatccgaatgcatcttgcttggtgatgactacagaa
atctggcgcagtatgcagtacaaaggatcagagattacacgtgaggtggcttgggttatt
tttgaggaagtacattacatttgcgtggataagggaagaggtngggtaggggaagagagt
attgttatggcgccaaagaattctcgatttgtattcctctcagcaacagtgcctaatgca
aaggagtttgcagattgggttgcaaaggtccaccagcaaccatgtcatattgtttatact
gattatcgaccaacaccgcttcagcactatgtttttccttctggaggcgatggcctatac
ttggtggtagatgaaaacgggaaatttcgtgaggatagctttcagaaagctttaaatgcc
cttgttccctctaatgaaggtgacaggaaaagggagaatgggaaatggaagaagaatttg
gtagttggtaaggctggtgaagaaagtgacattttcaagatggtgaaaatgatcattcag
cgtcaatacgatcctgtgatacttttcagctttagcaaaagggaatgtgaaactcttgca
atgcagatggcaaaaatggatctaaatgttgatgatgagaaagtgaccatagagaccatc
ttctggagtgctatggatatgttatcagatgatgataagaagctacctcaggtttcaaat
atgctaccccttttgaaacgcggaataggtgtgcatcattccggcttgcttcctatacta
aaggaagttattgagatactatttcaagaagggcttatcaagtgtttgtttgccacagag
actttcagtataggtttgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagataagtttagatggatatccagtggagagtatatacaaatgagtggacgt
gctggtcgtagaggtattgatgaccgtgggatatgcatcctcatggtggatgaaaagctg
gaaccttctactgctaaaatgatgcttaaaggaagtgctgatagtttgaacagtgctttc
catttaagctacaacatgcttttgaatcaaatgcggtgtgaagatggtgaccctgaaaat
ttgctccgtaattcattttatcaatttcaggctgaccgagccattcctgatcttgagaaa
caaagaaaggaccttgaaaaggagagggattcaattgtaatagaagaagaagatagcttg
gagaattattattctctgctggagcaatacaaaagtctgaaaaaggatgtccgtgatatt
gtgtttgctccaagatactgcttgccatttttgcagccaggaaggcttgtatccatccag
tgcacaaagagtgacgaaacttcctcatctttctccatcaaggaccaagtcacatgggga
gtaataatcaattttgaaagggtgaaaggtcgttccgaagatgatgcaaataggaaacca
gaggatgccaactacactgtagatgtgcttacaaaatgtgcagtgcgtaaggatgaagtt
gggaaaaagacaattaagattattcctttgaaagagcgtggagaacctgttgttgtttct
gttcctatttctcaggttgatagcttaagtagtgtccggctaatgataccaaaagatctt
ttaccattggaagctcgagaaaataccttaaagaaggtgtcagaagttctctcaagattt
gctaaagaaggaatgcctctattggatcctgaagaagacatgaaagttcaaagtagctct
tacagaaaggctgttcgtaggatagaggctttagagaacttgtttgaaaagcatgaaatt
gcaaaatctccacttattgaacaaaagctcaaagttttacacatgaagaaagaacttaca
gccaagatcaaattaatcaagagaacaatacgttcttccacagcattagctttcaaagat
gaacttaaagcaaggaaaagggttctcaggagactcggatatgtcacaagtgatgacgtt
gtggagttgaagggtaaggttgcttgtgaaatcagtagtgcagatgagttgaccttgaca
gaactcatgtttaatggtgtttttaaggacataaaggtagaagagatggtgtctcttctt
tcttgctttgtctggcaagagaagcttcaggatgctcaaaagcccagggatgaacatgag
tttctctttacacaattacaagatacagcccggagggttgcaaaagtccagcttgagagc
aaggtccaaattgatgtggagaattttgtgagctctttccgatctgatatcatggaggca
gtgtatgcttgggcaaaaggttccaaattctacgagattatggaaatcactcaagtcttc
gagggcagcttgatcagggctatcaggagactggaagaagttcttcagcagctaatacaa
gcagcaaaatccattggagaaactgagctcgaagcaaaatttgaggacgctgtttccaag
attaagagagacattgtctttgctgcatctctttacttgtaa
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