Camellia sinensis (tea plant): 114292329
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Entry
114292329 CDS
T07364
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114292329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114292329
03009 Ribosome biogenesis [BR:
csin03009
]
114292329
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114292329
Spliceosome [BR:
csin03041
]
Complex A
U2 snRNP components
U2 related factors
114292329
Complex B
114292329
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
114292329
Ribosome biogenesis [BR:
csin03009
]
Eukaryotic type
90S particles
Helicases
114292329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_N
DEAD
Helicase_C
AAA_22
HA2_C
AAA_19
nSTAND3
ABC_tran
T2SSE
AAA_30
FtsK_SpoIIIE
SRP54
AAA_7
TsaE
AAA_29
AAA_24
Motif
Other DBs
NCBI-GeneID:
114292329
NCBI-ProteinID:
XP_028092064
LinkDB
All DBs
Position
Unknown
AA seq
543 aa
AA seq
DB search
MGTERKRKVSLFDVVDESSVSAKLAKSNGGIAAQGNNLINRWNGRPYSQRYYEILEKRKT
LPVWHQKEEFLQVLKSNQTLVLVGETGSGKTTQIPQFILDAVDIEAPDKRRKYMVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLER
YKVIVLDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNSAPLMKVP
GRLHPVEILYTQEPERDYLEAAIRTVVQIHAYEPPGDILVFLTGEEEIEDACRKITKEIG
NMGDACGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEGGTPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKLGEIMSEFPLDLQMSKMLVVSQEFNCSNEILSIFAMLSGCRLLPGFLCVCESNCGS
KVM
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagaggaagaggaaggtgagcttgttcgatgtggtcgatgagagctcagtc
tctgcaaaacttgcgaaatctaatggcggcatagcagctcaagggaacaacttgatcaac
cggtggaatgggcggccgtattcgcagaggtattacgagatattggagaagaggaaaacc
ctacctgtttggcaccagaaagaagagttcttgcaagttttgaagtctaatcaaacccta
gtcttggttggtgaaactggtagcggtaaaaccactcagattcctcagtttattcttgat
gctgttgatatagaggccccagataaacgcaggaaatacatggttggctgcacccagcct
cgtagggtagctgctatgtctgtttctcgtcgggttgctgaagagatggatgtaactatt
ggagaagaagttggttatagcatccgttttgaagactgcagtagtgcaagaacagttttg
aagtatttgacagatggtatgcttttaagagaagctatgacagatccgcttttggaacgt
tacaaagtgatagttcttgatgaggctcatgaaagaactttggcaaccgatgttttattt
gggcttttgaaggaagtattgagaaatagacccgacctgaaactagttgtaatgagtgct
actcttgaggccgaaaagtttcagggttatttcaatagcgcacctcttatgaaagttcca
ggaagactgcatccagtggagattttgtacacacaggaacctgagagggattaccttgag
gcagcaattcgtacagttgttcagatacacgcatatgaaccacctggtgacatacttgta
tttcttactggagaggaggagatagaagatgcatgtaggaaaataacaaaagaaattgga
aatatgggagatgcttgcgggcctgtgaaagcagtgccactgtattctacgcttcctcct
gctatgcagcagaagatatttgaacctgctcctccccccctgactgagggcggcactcct
gggaggaagattgtagtctcaacaaacattgcagaaacctctttgaccatagatggtata
gtttatgtgatagaccctgggtttgcaaaacaaaaggtctataaccctcgaatacgtgtt
gaatctttgttggtctctccgatatcaaaggctagtgctcaccaaagatcaggtcgtgct
ggaagaacccaaccaggaaaatgttttagactctacactgagaaaagtttcaataacgat
cttcagccacagacatacccagaaatactgcgatcaaaccttgcaaacacagttctcacc
ttgaagaaactagggatagatgatttggtccattttgattttatggatccccctgcccca
gagacattgatgcgcgcattagaggttttgaattacttgggagcgttggatgatgaaggc
aacttgaccaagctgggtgagatcatgagtgagttccccttggatctgcagatgtcaaag
atgcttgttgtcagccaggaatttaactgttcaaatgagattctgtctatttttgccatg
ctttcaggttgtcgtctgttaccgggctttctttgtgtctgtgagtctaattgtgggtct
aaggtgatgtag
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