Camellia sinensis (tea plant): 114294237
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Entry
114294237 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114294237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114294237
03012 Translation factors [BR:
csin03012
]
114294237
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114294237
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114294237
Translation factors [BR:
csin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114294237
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
NACHT
T2SSE
Dicer_dimer
PhoH
Motif
Other DBs
NCBI-GeneID:
114294237
NCBI-ProteinID:
XP_028094162
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MNGAGSLQFPLYTSYSKTLKQTSIRHYHHPPAMKDRPPPSAYGAVYVPPHHRHRSLITSS
APSNHSSSAPFVVDSKTVTTHNNNNNNNNSFPRGNSYPYLPYHQHQHQQQHRHQLKKISH
FDADADDFSEEGSDFDIDPPSNPGAPTSDNVDGWKWKLTKLLHSKHKQELVSRDKKDRRD
FEQIASLASKMGLYSNLYVKVVVVSKLPLPNYRFDLDDRRPQREVVLPPSLQRRVDCYLE
DHLSQKFGSMESIRDNAFSRSNSSCSIATDEGLFEQPEPLPQSKAVMGKIIWRRSMQMRS
QQQAWQESREGRKMMKFRQSLPAYKEKDALLMAISQNQVVIVSGETGCGKTTQIPQFILE
SEIESVHGPLCSIICTQPRRISAMSVSERVAAERGEKLGETVGYKVRLEGMKGKDTHLLF
CTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATL
DAELFSSYFGGAPMVHIPGFTYPVRTHFLENILEMTGYQLTPYNQIDDYGQDKMWKMNKQ
APRKRKSQIASAVEDALRAADFKDFSPQTQESLSCWNPDCIGFNLIEYLLCNICEKERPG
AILVFMTGWDDISSLKDKLQAHPILGDTSRVLLLACHGSMASAEQRLIFDEPEDGVRKIV
LATNIAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSAKQRRGRAGRVQP
GECFHLYPRCVYDAFADYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQ
NAIEYLKIIGALDENENLTVLGHYLTKLPMEPKLGKMLILGAILNCLDSVLTVVAGLSVR
DPFLTPLDKKDLADLAKAQFSRDYSDHLALVRAYEGWKDAERDLAGYEYCWKNFLSAQSM
KAIDALRREFYSLLKDTGLVDGNTTTCNSWSYDEHLLRAVICYGLYPGICSIVHNEKSFS
LKTMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGAIS
RGDTDGHLKMLGGYLEFFMKPAIAEMYQSLRREFEELIHNKLLNPRTVHKHIKLISAVRL
LISEDQSDGRFVFNHQVLLPSKLPPITAKPQALVSRTDSGPGGDNSKSQLQMLVTRAGYD
APTYKARQLQNNQFIATVEFNGMQIMGQPCQNKKQAEKDAAAEALEWIMGGTRKGHDYIE
HMSMLLKKSSRDHS
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaacggggctggttctctccaattccccttgtacacttcttactccaaaaccctaaaa
caaacctccatcagacactaccaccacccgccggcgatgaaggaccggcctccgccatcg
gcttacggcgccgtctacgtccccccgcaccaccgccatcgctccctcatcacttcctct
gctccctccaatcactcctcttctgctccctttgttgtcgactcaaagactgtcaccact
cacaacaacaacaacaacaacaacaacagctttcccagaggcaattcctacccttacttg
ccttaccaccaacaccagcaccaacaacaacaccgacaccagctgaagaagatttcgcac
ttcgatgccgatgccgatgatttctcggaagaaggttctgattttgacatcgaccccccc
tccaatcctggtgctcccacctcagataatgttgatgggtggaaatggaagttaactaag
ctcttacacagcaaacataaacaagagctggtgtcaagggacaaaaaggacagacgagat
tttgagcaaatagcgtctttggcaagcaaaatgggtttgtatagcaatctgtatgtaaaa
gttgtcgttgttagtaagcttccattgccaaactacagatttgatctggatgataggcgg
ccacagagagaggtggtcttacctcctagtttacaaaggagagtggattgttatcttgaa
gatcacctttctcaaaagtttgggagtatggagagtattcgggataatgcattttcaaga
tcaaacagtagctgtagtattgccactgacgaggggctttttgagcaaccggagccactg
ccacagagtaaggctgtcatggggaaaatcatttggagaagaagtatgcaaatgcgcagt
cagcaacaagcttggcaggaatctcgagaaggtagaaagatgatgaaatttcgtcaaagt
ctccctgcttataaagagaaggatgctttattaatggccatttcacagaatcaggttgtt
atcgtctcaggtgaaactgggtgtgggaagacaacgcagattccccaattcattttggaa
tctgagattgagtctgttcatggacccttatgtagtattatctgtactcagcctcgacga
atatctgctatgtctgtttctgaaagagttgctgcagagaggggagagaaattgggtgaa
acagttggttataaagttcggttggagggtatgaaaggaaaggacacccacctcctcttt
tgcaccacaggcatcttgttgagaagattactggtagacagaaatttgaagggcgtcact
catgttattgtcgatgagattcacgagcgtggaatgaatgaagattttctacttattgtc
ctcaaagatcttcttcctcgtcgaccggaactgaggttgattttgatgagtgcaacctta
gatgcagagcttttctcttcctactttggtggggctccaatggttcatattccgggcttt
acctaccctgttcgaactcatttcctggaaaatattctggaaatgactggatatcaattg
accccatacaatcaaatcgatgattatggtcaggataagatgtggaaaatgaacaaacaa
gctccaagaaagaggaagagccaaattgcttcagctgttgaggatgcactcagagctgct
gattttaaggattttagcccacagacacaagaatctctgtcctgttggaatcctgattgt
attggttttaacctcattgaatatcttctatgcaacatatgtgagaaagaaaggcctgga
gctattttagtatttatgacggggtgggatgacataagctctctgaaggataagctccaa
gctcatcctatcttgggagatacaagccgagttttgttgcttgcatgccatggttctatg
gccagtgcggagcagaggttgatatttgatgagcctgaagatggagtgaggaaaatagtg
ctagctactaatattgccgagacaagtataacaattaatgatgtggtttttgttatcgac
tgcggaaaggcgaaagaaacatcatatgatgcactgaataacactccttgtttgcttcct
tcctggatttcaaaggtttctgctaaacaaagaagaggaagagctggccgcgttcaacca
ggagagtgtttccatctttatcccagatgtgtatatgatgcttttgcagattatcagtta
ccagaaattttaaggacacctttgcagtccctttgtctgcaaatcaaaagtttgaaactt
ggaagtatttctgagttcttgtctagggctttgcagtcaccagaattattagcggttcaa
aatgctattgaatatttaaaaatcattggggcattagacgagaatgaaaatttgactgta
ttaggacactacttgacaaagcttccaatggagcctaaacttggaaagatgctaatactt
ggtgctatattaaactgcctggattcagtattgactgttgtggctggtcttagtgtccga
gatccattcctaacaccattggataagaaggatctagcggatttagcaaaagcacaattt
tcacgtgattacagtgaccaccttgctcttgtccgtgcatatgagggctggaaagatgct
gaaagagacctagctggatatgaatactgctggaagaattttctttctgcacaatcaatg
aaagctatcgacgctctacgaagggagttctactccttgctcaaggacactggccttgtt
gatggcaatacaaccacctgcaattcatggagttatgatgaacatctccttcgagcagtt
atttgctatggcctgtatcctggaatttgttctattgtgcacaatgaaaagtcattctct
ttaaaaacaatggaggatggtcaggtgcttctgtattctaactctgtcaatgctcgggaa
tctaagattccatatccatggctagttttcaatgagaagatcaaagtgaattctgttttt
cttcgggattcaacagctgtgtctgattcagtattgctactatttggtggagccatttca
agaggggataccgatggccacttaaaaatgttaggaggatacttggagttcttcatgaaa
cctgccatagcagaaatgtaccaaagtttaaggagagaatttgaggagttaattcataac
aaactgctgaatcccaggacagtacacaaacatatcaaacttatatcagccgtaaggttg
ctaatctccgaggatcaaagcgatggcagatttgtgttcaaccatcaggtgctactgccc
tcgaagctgcctcctattacagcaaaacctcaagccttggtttcaagaacagacagtggt
cccgggggtgataattcaaagagccagctccaaatgttggtcacacgggcaggttacgat
gcaccaacgtacaaggcaaggcaactacagaacaaccagttcatagccactgtggagttc
aacggaatgcagatcatggggcaaccttgtcaaaacaagaaacaagctgaaaaagatgca
gcggccgaggctctggaatggattatgggagggacacgtaaaggccatgattatatcgaa
cacatgtcaatgttgctgaagaagagcagcagggatcatagctaa
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integrated database retrieval system
