Camellia sinensis (tea plant): 114296730
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Entry
114296730 CDS
T07364
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114296730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114296730
03036 Chromosome and associated proteins [BR:
csin03036
]
114296730
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114296730
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114296730
mRNA degradation factors
5'-3' decay
Decapping complex
114296730
Chromosome and associated proteins [BR:
csin03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114296730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
114296730
NCBI-ProteinID:
XP_028096854
LinkDB
All DBs
Position
Unknown
AA seq
496 aa
AA seq
DB search
MNNTRGRYPPGMGGGGGGRGGGGMHANPNFQPRNFQQQYVQRSPMQNHLQYQNQQHHHHQ
QQQQQQWLRRNQLGAESSVVEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYMTEDVTATK
GNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPA
LEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQP
VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM
FSATFPVTVKDFKDRYLQKSYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQIN
QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT
RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT
EIKQIPPHIDQGIYCR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaataatacgcgaggacgatatccgcctgggatgggcggcggaggaggtggccgtggt
ggtggtggcatgcatgctaaccctaactttcaacctaggaactttcagcaacagtatgtg
caaaggagtccaatgcagaaccatttacagtaccagaaccaacaacatcatcatcatcag
caacaacaacaacagcagtggctgaggaggaatcaattgggagccgagtcgagtgttgtc
gaagttgagaagactgtacagtcggaggctgtcgattctagttcacaagattggaaggca
cggttaaagattcctccacctgatactcgatacatgactgaggatgtgacagccactaaa
ggaaatgagttcgaagactattttttaaaacgtgaactactgatgggaatatatgagaag
gggtttgaaagaccgtctcctattcaggaggaaagtattcctattgcactaactggaagc
gatattcttgcaagggccaaaaatggaactggaaaaactgctgccttttgtattcctgcc
ttggaaaaaattgatcaagataacaatgttatccaagtcgtcatacttgttccaacacga
gaattggctctacagacatcccaagtttgtaaggaacttgggaagcacttacaaattcaa
gtcatggttaccaccggtggaaccagcttaaaagatgacataatgcgtttgtatcaacca
gttcatctactcgttggaactcctggaagaatactagatcttgctaaaaaaggtgtttgt
gttttgaaagattgtgcaatgctcgtcatggatgaggctgataaactgttgtctccagag
ttccaaccatcagtggagcagctgattcgatttctacctgcaaatcgtcaaatattgatg
ttttcagccacatttccggttactgttaaagactttaaagatagatatttacagaaatcc
tatattattaaccttatggatgagcttactctgaagggtataacacaattctatgctttt
gttgaagaaagacagaaagtccactgcctaaacactcttttctcaaagcttcaaatcaac
caatcaatcattttctgcaattctgtgaatcgggtagaacttctggccaagaaaattaca
gagcttggttattcttgcttctacattcatgcaaagatgcttcaagatcatcgcaacaga
gtatttcatgatttccgtaatggtgcatgcaggaatcttgtctgtacagatctatttaca
agggggatagacattcaagcagtcaatgtcgtgattaattttgattttcctaagaatgca
gaaacttatcttcacagggttggtcgatcagggaggtttggacacctcgggttagcggtg
aatttgatcacttatgaggatcgtttcaacttgtataggattgagcaagaactcggaact
gagataaagcaaattcctccacatatagatcagggtatttactgccggtga
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