Camellia sinensis (tea plant): 114297334
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Entry
114297334 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114297334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114297334
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114297334
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114297334
mRNA degradation factors
3'-5' decay
Ski complex
114297334
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
114297334
NCBI-ProteinID:
XP_028097551
LinkDB
All DBs
Position
Unknown
AA seq
1354 aa
AA seq
DB search
MDRITAVNELPFRVGFTGHSGHLRLEPLPPVERPNPLNSLPDFILPPAFPRETPESIREY
IEEKYLLPRLDPDEFSPQKAGRQWEFDWFNTAKIHLEPSLPRSVVVPTWELPFRRPKKGL
EQEKWEPVSVQVEVSELTVEAEDSGGLPRMSGSAKDFVKGSINNRPFRPGGLDGSQALER
ILPVGASNGEWVWEVINGGPPQAIPPSIKQGLDLGNLKAHSYSWNVYKDQNEVKSTSDEN
LNQLSVQFDDLFKKAWEEDVAEFVRDGHVSESEAEVNEESVKLESVELEAEVNKENVPGT
VFDTESSLLDDILLVESGGSTSRSHETSDSGGQQHKEGWAISGDSEGIAEHFHELVPDMA
LEFPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHYTRAVYTAPIKT
ISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV
HYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPV
PLEHCIFYSGELYKICENEIFKAQGLKAAKDAYKRKNPNTVGGGTGAHPGFSAGHEGSRG
QKRENSFRDKQNKHSGSFSGVGGGNQQTSSNRVSWRTEMSLWLLLINKLSRKSLLPVVIF
CFSKNRCDKSADNLSAIDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNLLRRGI
GVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQL
LPGEYTQMAGRAGRRGLDLIGTVIIMCRDEIPEESDLKRVIVGSATRLESQFRLTYIMIM
HLLRVEELKVEDMLKRSFAEFHSQKKLPEKQQLLMRKLALPTKTIECIKGEPSIEEYYEM
HSEAEKHSNQISEALMQSSHFQQALSVGRVMVVKSQSDQDHLLGVIVKVPSANTNTKRYI
ALVLTPELPPTSQASLTGGNLQDKKTADFQILAPKAKRGFDDEYYSSPTARKGSGVVNIK
LPHHGSAAGVNYEVREIDNKEILSICNCKVKINQSGLLEDNSSAAYSKTVQELLDKKSDG
KYPQALDPVKDLRLSDLEVVSVYHKWNGLLQKMAQNKCHGCVKLGEHIKLAKLIKSHREE
VDALKFQMSDEALQQMPDFQGRIDVLKETGCIDTDLVVQIKGRVACEMNSGEELICTEWL
FENQLDDLEPEEAVAIMSALVFQQKNTSEPSLTPRLAQAKQRLYEIAIRLGELQAHCKVQ
INPEEYAQENLKFGLVEVVYEWAKGTPFADICDLTDVPEGLIVRTIVRLDETCREFKNAA
SIMGNSALYKKMESASNAIKRDIVFAASLYITGV
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatcaccgcagtgaacgagctcccctttcgggttgggttcaccggccacagc
ggccacctcaggctcgagcccctcccgcccgtcgaacgccccaaccctctcaattctcta
cccgactttatactaccacctgcatttcctagggaaacacccgaatcaataagagagtat
atagaggagaagtatctcttgccaagattggaccctgatgagttttctccacaaaaagct
ggaaggcagtgggaattcgactggttcaatacagcaaaaattcacctagagccatcattg
ccccggtctgttgtagttcctacatgggaattacctttcagacgcccaaagaaggggttg
gagcaagaaaaatgggaacccgtgtcggtgcaggtggaggtatcagaacttacagtagaa
gctgaggattctggtggcttgccacgcatgtctggatctgcaaaggattttgtaaaagga
agcatcaataaccggccttttcgtccaggtggtttagatggttcccaagctttagaaagg
attcttcctgttggtgcctctaatggtgaatgggtatgggaggtaataaacggtggtcct
cctcaagccattcctcctagcattaaacaaggactggatcttggtaatctcaaggcacat
tcatactcatggaatgtttataaggatcaaaatgaggtcaagagcacatctgatgaaaat
ctgaatcagttatctgtgcagtttgatgacttatttaagaaagcatgggaagaggatgtt
gcagaatttgtgagagatggtcatgtgtcagaatcggaagctgaagtcaatgaggaatca
gttaaattggagtctgttgagttggaagctgaagtgaataaggaaaatgtacctggtact
gtttttgatactgaatcatcgctgttagatgatattttgttagtagaatcaggaggatca
acttcaagatcgcatgaaactagtgatagtggtgggcagcagcataaagagggctgggcc
attagtggagacagtgaagggattgcagaacattttcatgaacttgttcctgacatggca
cttgaatttccttttgaactggataaattccaaaaggaggctatctattatcttgagaag
ggggagtctgtttttgtggcagctcacacatcagctgggaagacggttgtcgcagaatat
gcatttgctctggcatcaaaacactacacaagagccgtatatactgctccaattaaaacc
attagcaaccaaaagtacagggatttttgtggaaaatttgatgttggccttctcaccggg
gatgttagcttgaggccagaggcttcttgtctcatcatgaccactgagatactaaggtca
atgctttataggggtgctgatatcatacgtgatattgaatgggttatatttgatgaagtg
cattatgttaatgacgttgaaaggggcgttgtttgggaagaagttatcatcatgcttccg
aggcatatcaatattattcttctttcagccacggtaccaaacacaattgaatttgctgac
tggattggtcggacaaaacagaagaaaattcgtgtcactgggacaacaaaaagaccagtc
cctttggagcattgcatcttttattctggagaactttataaaatttgtgaaaatgaaatc
tttaaggctcagggtttgaaagctgctaaggatgcatacaagagaaaaaatccaaataca
gttggtggtggtaccggagcacatcctgggttttcagcaggccatgaagggagtcgaggt
caaaaacgtgaaaattctttccgggacaaacagaacaaacattctgggtctttttctggg
gtgggtggtgggaaccaacaaactagtagcaatcgggtgtcctggagaacagaaatgtct
ttgtggttgttgcttataaataagctttcaagaaagtcattattacctgtggttatattt
tgcttttcaaaaaatcgttgtgacaagtcagctgataatttgagtgcgattgacctcaca
agtagttcagagaaaagtgaaattcgagtcttctgtgacaaagcattttcaaggctgaag
ggatctgacaggaacctccctcaggtggtcagagttcaaaaccttctccgtagagggatt
ggtgtacatcatgcggggttgcttccaattgttaaagaagttgttgagatgcttttttgc
cgtggtgtgattaaggttttattttcaacagagacatttgcaatgggagtaaatgcccca
gctaggacggtggtttttgataccttaaggaagtttgatggcaaggaatttaggcaattg
cttcctggagaatacactcaaatggctggtcgtgctggcaggagaggtctggatttaatt
ggtacagtgatcattatgtgccgtgatgaaattccagaagagagtgatttgaaacgtgtc
atagttggcagtgcaaccaggcttgaatctcaatttcgactgacctacatcatgatcatg
catctccttcgtgttgaagaattgaaggtggaggacatgttgaaaagaagttttgctgaa
tttcattctcagaagaaacttccagagaaacaacaactgctaatgcgaaagcttgctctg
cctacgaaaactatcgaatgtataaagggtgaaccctcaattgaggaatactatgagatg
cactcagaagctgagaaacatagcaaccagatatcagaggcactcatgcagtcctcccac
ttccaacaagctctttcggttggaagagtcatggttgtgaagtcgcagtcagaccaagat
cacttgcttggagtcattgtaaaagtaccttctgctaatactaatactaaacgatacata
gctttagtcctaacaccggaattaccaccaacttcacaagcttccttgactggtggtaat
ttgcaagataagaagactgctgattttcagatactggcaccaaaagcaaaacgtggtttt
gatgatgaatattattcttcccccactgctcgcaaaggatcaggtgttgtcaacataaaa
ttacctcaccatggtagtgctgctggtgtgaattatgaggttagggagattgacaataaa
gagatcctatctatatgcaattgcaaagtgaagattaatcaaagtgggcttctagaagat
aatagcagtgctgcttattctaagactgtgcaagagctattagataaaaaatctgatgga
aagtaccctcaggcattggatccagtgaaagatctgaggttgagtgacttggaagttgtg
agcgtttatcacaaatggaatggcctattgcagaagatggcacagaataagtgtcatggg
tgtgttaaattgggggaacacatcaaactagcaaaattgataaagagtcatagagaggaa
gtcgatgctcttaagtttcaaatgtcagatgaagcacttcagcagatgccagactttcag
ggtcgaattgatgttctgaaggaaactggctgcatagatactgacctggttgttcagatc
aaagggcgcgttgcttgtgagatgaattctggggaggagttgatatgcacggaatggttg
tttgagaaccaactggatgatctggaaccagaagaagcagtggcaataatgtctgccctt
gtgtttcagcagaagaatacttctgaaccttctcttactcccaggctggcccaggctaaa
caaagattgtatgaaatcgccataagacttggggagcttcaagcgcactgcaaagtacag
attaaccctgaggagtatgctcaagaaaatcttaagtttggtcttgtcgaagtggtctat
gaatgggcaaagggcactccatttgcagatatatgtgaccttaccgatgttcctgaaggg
ttgatagtgaggaccattgtcagactagatgagacatgccgtgaattcaaaaacgcggca
tcaataatgggtaattccgcgttatacaagaagatggaatctgcttccaatgcaataaag
cgtgacattgtttttgcagctagcttgtacattacgggtgtgtga
DBGET
integrated database retrieval system
