Camellia sinensis (tea plant): 114298526
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Entry
114298526 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114298526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114298526
03041 Spliceosome [BR:
csin03041
]
114298526
03009 Ribosome biogenesis [BR:
csin03009
]
114298526
03016 Transfer RNA biogenesis [BR:
csin03016
]
114298526
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114298526
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114298526
Spliceosome [BR:
csin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114298526
Complex C
U4/U6.U5 tri-SnRNP related factors
114298526
Ribosome biogenesis [BR:
csin03009
]
Eukaryotic type
Pre-60S particles
Helicases
114298526
Transfer RNA biogenesis [BR:
csin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114298526
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
114298526
NCBI-ProteinID:
XP_028098916
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MEEESPTTTATLGKRKVTEKEEEDRESASKRRNLARTCVHEVAVPSGYASTKDESIHGTL
SNPVYTGEMAKTYPFDLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELNQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVSWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFVEWICNLHKQP
CHVVYTDFRPTPLQHYVFPMSGSGLYLVVDENEQFREDNFMKLQDTFTKQKQKQGDGNKS
ANAKASGRISRGGNTSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNT
PEEKDVVEQVFQNAILCLNEEDRNLPAIELMLPLLHRGIAVHHSGLLPIIKELVELLFQE
GLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERG
ICIIMIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQ
FQYEKALPDMGQKISKLEEEAAMLDASGEVEVAEYHKLKLDIAQLEKKMMAEITRPERVL
YFLLPGRLVKVREAGTDWGWGVVINVVKKPPAALGTLPPALSSSRGISYIVDSLLHCSIG
SSENGCRPKPCPPRPGEKGEMHVVPVQLPLISALSKIRISIPSDLRPVEARQSILLAIQE
LEKRFPQGLPKLNPVKDMGIEEPEFVELVNQIEELEQKIFAHPLHKSQDEHQIRCFQRKA
EVNHEIQQLKAKMRDSQLKKFRDELKNRSRVLKKLGHIDTDGVVQLKGRAACLIDTGDEL
LVTELMFNGTFNDLDHHQIAALVSCFIPGDRSSEQIQLRAELAKPLQQLQDSARRIADIQ
HECKLEINVDEYVEAAVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSVIRLARRLDEFLN
QLCAAAHAVGEADLEKKFAAASESLRRGIMFANSLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagtcgccaacaacaacagcaactcttgggaagcggaaagtaacagaaaag
gaggaggaggatcgggaatctgcatcgaaacgtcgtaatttggctcgaacatgtgtgcac
gaggttgctgttccaagtgggtacgcatccaccaaagacgagtctattcacgggacattg
tcaaatcctgtttatactggggagatggcaaaaacctacccgtttgatctagaccccttt
cagcaagtttcagtggcatgtttagaacgaaatgaatcggttctggtttctgcccacact
tcagccgggaaaactgctgttgctgagtacgcaattgcaatggcttttagagataaacaa
agggttatatatacttcgcccttgaaagctttaagcaaccagaagtatagagagctaaac
caggagttctcggacgttgggttgatgaccggtgatgttacactatctcccaatgcaagt
tgtttggtcatgaccacagaaattctcaggggaatgctttacagaggttctgaggtgttg
aaggaagtttcttgggttatatttgacgaaatacattacatgaaggatcgggaaagaggg
gttgtttgggaagagagtatcatattcttgcctccggctattaagatggttttcctttca
gcaacaatgtccaatgctaccgagtttgtggaatggatatgtaatttgcataaacagcca
tgtcatgtggtgtatactgattttcgaccaacacctctacagcactatgtgttccctatg
agtggctcagggttgtatcttgttgtggatgagaatgagcaatttagggaggacaatttt
atgaagttgcaggatactttcacgaagcagaagcagaagcagggcgatgggaacaagagt
gccaatgccaaggccagtggcagaatttcgagaggcgggaatacctctggtggttctgac
atatacaaaattgtcaagatgattatggaaaggaaatttcaaccagtcataattttcagc
tttagtagaagagaatgcgaacaacatgcaatgtccatgtctaaacttgattttaatacc
ccagaggagaaggatgttgttgagcaggttttccaaaatgcaatactatgcttgaatgag
gaggatagaaacttacctgctatcgagctgatgttgccattgcttcatcgaggcattgct
gttcatcattctggacttctccctattatcaaggaattggtggaacttctcttccaggaa
ggccttgtaaaagcactttttgccacagagacatttgctatgggtttaaacatgcctgca
aaaactgttgtttttaccagtgttaagaaatgggatggagacagtcatcgttacattgga
tctggtgagtatatccagatgagtggaagagccggtcgccgtggcaaagatgagcgtggt
atttgtattataatgattgatgagcagatggagatgaataccctcaaggacatggttttg
ggtaaaccagctccattggtcagtacttttagactgagctattactcaattttgaattta
atgagccgtgctgaaggccaatttactgctgagcatgttatcaggaattcgtttcaccaa
tttcagtatgaaaaggctttaccagatatggggcaaaagatttcgaagcttgaagaggaa
gctgccatgctcgatgcctctggagaagttgaggttgctgaatatcataaactaaagcta
gatatagcccagcttgagaagaaaatgatggcagaaataacaaggcctgaaagagttctt
tattttcttctccccggtaggctggttaaggtacgggaagctggaacagattggggttgg
ggagttgtaattaatgtggttaaaaagcccccagcagcattaggcactttgccccctgca
ttatcttcttcacgtggtattagctatattgtggattctttgcttcattgctctattggt
tcaagtgaaaatggttgtcgtccaaagccatgtccaccccgtcccggagagaagggtgaa
atgcatgtggttcctgtacagttgcccttaatttctgcccttagcaaaatcagaatatcg
atcccttctgatctccggccagtggaagcaaggcaaagtatacttcttgctatacaggag
cttgaaaaacgtttccctcaaggtcttccaaagcttaatcctgttaaggacatgggcatt
gaagagccagaatttgttgagttggtcaatcaaattgaggagcttgagcaaaaaatattt
gcacatcctcttcacaagtctcaagatgaacatcagatcagatgtttccagaggaaagcg
gaagtcaatcatgaaattcaacaactaaaagcaaaaatgcgtgattcccagcttaaaaag
tttcgtgatgaactcaagaaccgttcacgggttctgaaaaagcttggccatattgatact
gacggtgttgtccagttgaaaggacgggcagcctgcttgattgacacaggagatgaactc
cttgttacggaattgatgttcaatggtaccttcaatgatcttgatcatcatcaaattgca
gcccttgtaagttgcttcattccgggagacagatcaagtgagcagatacagttacgagca
gaacttgctaaaccattgcaacaactgcaagacagtgccagaagaatagcagatatacaa
catgaatgcaaattggaaataaatgtggatgagtatgtggaggcagccgttagaccattc
ttgatggatgtcatttactgttggtcaaagggagcatcttttgcagaggtaatacaaatg
actgatatctttgaggggagtgttatacggctcgctagaaggctggatgaatttctgaac
cagttgtgtgctgctgctcatgctgtgggggaagctgatttggagaagaagtttgcagcg
gctagtgaaagccttcgtcgaggtattatgtttgccaattccttgtatttgtag
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integrated database retrieval system
