Camellia sinensis (tea plant): 114299028
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Entry
114299028 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114299028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114299028
03012 Translation factors [BR:
csin03012
]
114299028
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114299028
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114299028
Translation factors [BR:
csin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114299028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
GAT
Motif
Other DBs
NCBI-GeneID:
114299028
NCBI-ProteinID:
XP_028099499
LinkDB
All DBs
Position
Unknown
AA seq
806 aa
AA seq
DB search
MSVSERVATERGEKLGEMIGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVI
VDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAPTVHIPGFTYP
VQTHFLENILEMTGYRLTPYNQIDDYGQEKMWKMNKQAPRKRKSRIVSAVEEALRAADLK
DFSPDTQDSLSCWNPDCIGFNLIEYLLCNICEKEKPGAVLVFMTGWDDISSLKDKLLAHP
ILGDSGRVLLLACHGSMASEEQRLIFDEPEDGVRKIVLATNIAETSITINDVVFVIDCGK
AKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEL
LRTPLQSLCLQIKSLQLGSISDFLSRALQPPEPLSVQNAIEYLMIIGALDENENLTVLGR
NLSMLPVEPKLGKMLLLGAIFNCLDPMMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSAR
DYSDHLALVRAYDGWKDAERRQSGYEYCWRNFLSAQTLKAIDSLRKQFFFLLMDTGLVDN
NTEMCNAWSHDEHLIRAIICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAQEPK
IPYPWLLFNDKVKVNSVFLRDSTVVSDSVLLLFGGKISRGSLDGHLRMLGGYLEFFMKPS
LADTYLRLKTKLEELIQMKLLNSKLEIKNHNELLSTPSNNKKLVEKGAAAQALQWLTGDE
TWSPQKAVDHMAMLLKKSKKKRQVNATKWRDESLLCQGLALNDDLQRPLAKHEYITSGIS
AKTEKPKLRPVQALDVVFGTIIDVRE
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtttctgaaagggttgccacagagaggggagagaaattgggtgagatgattggt
tataaagttcggctggagggtatgaaagggagggacacccacctactcttttgcaccact
ggcatcttgttgagaagattactggtagatagaaatttgaagggtataacccatgttatt
gtcgatgagattcatgaacgtggaatgaatgaagattttctacttattgtactgaaagat
cttctgcctcggcggcctgaactgaggctgattttgatgagtgcaaccttagatgcagag
cttttctcttcctactttggtggggctccgactgttcacattccgggctttacctaccct
gttcaaactcatttcctggaaaatattctcgaaatgacggggtaccgattgaccccatac
aatcaaatagatgattacggtcaggaaaagatgtggaaaatgaacaaacaagctccaaga
aagaggaagagccgaattgtttctgctgttgaggaagcactaagagctgctgatttaaag
gatttttctccagacacacaagactctttgtcctgttggaatccagattgcattggtttt
aacctcatcgaatatcttctatgcaatatatgtgagaaagaaaagcctggagccgtttta
gtttttatgacggggtgggatgatataagctctctgaaggataagctccttgctcatcct
atcttgggagattcaggccgagttttgttgcttgcgtgccatggttcaatggcgagtgaa
gagcagaggttgatatttgacgagcccgaagatggagtgaggaaaatagtattagcaact
aatattgctgagactagtataacaattaatgatgtcgtttttgttattgactgtggaaag
gcgaaagagacatcatatgatgctctgaataacactccatgtctgcttccttcatggatc
tcaaaggcttccgctcggcagagaagaggtagagctggtcgtgttcaaccgggcgagtgt
taccatctctatccccgatgtgtatatgatgcttttgctgattatcaacttcctgaactt
ctaaggacaccgttgcagtctctatgcttgcaaatcaaaagcttacaacttgggagtatc
tccgatttcctatcaagggccttgcagccaccagagcctttatctgttcaaaatgcgatt
gaatatttgatgatcattggggctttggatgagaatgaaaatctaactgttctaggacga
aacttgtcaatgcttccagttgagcccaaactggggaaaatgctcttattaggagctatt
ttcaactgcctagatccaatgatgactgttgttgctggtctaagtgtcagagatccattc
ttgatgccatttgacaagaaggatcttgcagagtccgcaaaggcccagttctctgcccgt
gattatagtgaccatcttgctcttgtccgggcttatgatggttggaaagatgctgaaaga
cgtcaatctggttacgagtattgttggagaaattttctttctgcacaaactctgaaagcg
attgattcccttcggaagcaattcttttttttgctcatggacactggtctggttgataac
aatacagaaatgtgcaacgcatggagccatgatgagcatctaatccgagccatcatctgt
gctggtctgttccctggcatatgctctgttgtgaacaaagagaagtctatatcattgaaa
acaatggaggatggtcaggtacttctgtactcgaattctgtgaacgcccaggaacccaaa
attccatacccttggctgcttttcaacgacaaggttaaagtgaattcagtatttctccgg
gattcaactgtggtatctgattccgtgcttctcttatttggaggaaagatttctagaggc
agcttggatggacacttgagaatgttgggaggatacttggagtttttcatgaaaccttcc
ttggcagatacatatctaagattgaagactaagcttgaagaacttattcaaatgaaactt
ttgaattccaagctggaaataaaaaatcacaatgagctcctgtcaacgccttccaacaat
aagaaacttgtagaaaagggtgcagcggctcaagctctacaatggttgacaggtgatgaa
acttggtcacctcagaaagctgttgatcatatggcaatgcttttaaagaagagcaaaaag
aaacgtcaagtcaatgctactaagtggagggatgaatcactgctatgtcaaggacttgca
ctgaatgatgacttgcagcgaccactagccaaacatgaatacatcacctcaggaatttct
gcgaaaacagagaaaccgaagctcagacctgttcaagcactggatgttgtatttggtact
attatagatgtgagggaatag
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