Camellia sinensis (tea plant): 114300613
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Entry
114300613 CDS
T07364
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03013
Nucleocytoplasmic transport
csin03015
mRNA surveillance pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114300613
09122 Translation
03013 Nucleocytoplasmic transport
114300613
03015 mRNA surveillance pathway
114300613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114300613
03041 Spliceosome [BR:
csin03041
]
114300613
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114300613
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114300613
Spliceosome [BR:
csin03041
]
Complex C
Other components
EJC/TREX
114300613
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114300613
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
114300613
NCBI-ProteinID:
XP_028101274
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MVETKDNDAYEEELLDYEEEDEKVPDSVTAKANGESAKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKIAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLNELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaaacaaaggacaacgatgcttacgaggaagagcttctcgactacgaggaagag
gatgagaaagtccccgactccgtcaccgccaaagcaaacggcgaatccgccaaaaagggc
tatgttggaattcacagttccggattcagagatttccttttgaagccagagcttctgcgg
tctattgtagactctggatttgagcatccttctgaagtgcaacatgagtgtatccctcaa
gcgatattgggcatggatgtcatttgccaagctaaatctgggatggggaaaactgctgtt
tttgttctgtcaacactgcagcaaattgaacctgttgcaggtcaagttgctgcccttgtt
ctatgtcatacaagggaattagcttaccagatctgccatgagtttgagaggttcagcact
tacttacctgatatcaagattgctgttttctatggtggtgtcaatatcaaaattcacaag
gatctactaaagaatgaatgccctcacattgttgttggaacacctggaagaatactggca
cttgccagagataaggatctttctctgaagaatgttagacattttatccttgatgaatgt
gacaagatgcttgagtcacttgacatgaggagagacgtgcaggagatattcaagatgact
cctcatgataagcaagttatgatgttttcagcaacactcagcaaagaaatccgtcctgtt
tgcaaaaagttcatgcaagatccaatggaaatttatgtggacgacgaggccaagttgacc
cttcatggtcttgtacagcactacatcaaattgaacgagctggagaaaaaccgcaagttg
aatgaccttcttgatgctttggacttcaatcaagtagttatatttgtcaagagtgtgaac
agagctgcggagctgaacaagttgctggtagagtgtaattttccatccatctgcatccat
tctggcatgtctcaagaagaaaggttgacacgctacaagggcttcaaggaggggcacaag
aggatactcgtggcaacagatctggttggtaggggaattgacatcgaacgtgttaacatt
gtcatcaactatgacatgccagattctgcagacacttatctgcacagggtgggtagagct
ggtaggtttggtaccaaaggacttgcaatcacatttgtttcatctgcatcagattctgat
gttctcaatcaggttcaggagaggtttgaagttgatataaaggagcttcctgagcagatt
gatacgtctacatatatgccatcgtag
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