KEGG   Camellia sinensis (tea plant): 114301345
Entry
114301345         CDS       T07364                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114301345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csin03041]
    114301345
Spliceosome [BR:csin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    114301345
 Complex C
   U5 SnRNP specific factors
    114301345
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_Aladin WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_SCAP ASA1 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st PAC11 WDR90_beta-prop_4th WD40_RFWD3 CFAP251_N Beta-prop_DCAF4 Beta-prop_NOL10_N TRM82_WD Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR19_1st Tricorn_2nd eIF2A Beta-prop_VPS8 Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_ACSF4 Beta-prop_RIG_1st Beta-prop_Nup120_160 Nbas_N
Other DBs
NCBI-GeneID: 114301345
NCBI-ProteinID: XP_028102104
LinkDB
Position
Unknown
AA seq 355 aa
MMQTLPREGENALSVVGPRPMEWSTVPYSGPPAPGANGKQRTSSLESPIMLLTGHQSAIY
TMKFNPAGTVIASGSHDKEIFLWNAFGECKNFMVLKGHKNAVLDLQWTTDGSQIISASPD
KTLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVISGSDDGTAKLWDMRQRGAIQTF
PDKYQITAVSFSDASDKIYSGGIDNDVKVWDLRRNEVTMTLQGHQDMITGMQLSPDGSYL
LTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVIAGSSDRMVY
IWDTTSRRILYRLPGHTGSVNECVFHPIEPIIGSCSSDKQIYLGEISTATAPQFH
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgatgcaaacattaccaagagagggtgaaaatgctctatctgtggttggtccaaggcca
atggagtggtctactgttccttatagtggtcctccagcaccaggggcaaatggaaagcag
agaacatcaagtctggaatcacctatcatgttgttaacaggtcatcagagtgctatatac
acgatgaagttcaatccagccggaacagtcattgcatctggctcacatgacaaagaaatt
tttctttggaatgcgtttggggaatgcaagaacttcatggttttgaaagggcataagaat
gctgttttggatcttcagtggactactgatgggtcacagataatatcagccagtcctgac
aagacccttcgggcatgggatgtagaaaccggtaaacagataaaaaagatggcagaacac
tcttcttttgtgaattcatgctgtccttcccgtagaggcccacctcttgttatcagtgga
tctgacgatggcaccgcaaagctttgggatatgcgtcagaggggtgcgatccagacattt
ccagacaaataccaaatcacggctgtcagtttctctgacgcatcggataaaatctactct
ggtgggatagataacgatgttaaggtttgggatttgcggagaaacgaggttaccatgacg
cttcaaggacatcaggatatgataactggtatgcaattgagtccggatgggtcctacctt
cttaccaatggcatggattgcaagctctgcatatgggacatgaggccatatgctcctcaa
aatcgttgtgtgaagatattggaaggtcatcaacacaactttgagaagaacttgttgaaa
tgtggatggtcacctgatggaagcaaggtcatagctggtagttcagatcggatggtgtac
atttgggatacaacttctcgacgcatcttgtacagactccccggccacacaggatcggta
aatgaatgtgttttccatcccattgaaccaattattggatcttgcagcagcgataaacaa
atttatctgggggagatctctactgcaactgccccgcaatttcattaa

DBGET integrated database retrieval system