Camellia sinensis (tea plant): 114302411
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Entry
114302411 CDS
T07364
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114302411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114302411
03009 Ribosome biogenesis [BR:
csin03009
]
114302411
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114302411
Spliceosome [BR:
csin03041
]
Complex A
U2 snRNP components
U2 related factors
114302411
Complex B
114302411
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
114302411
Ribosome biogenesis [BR:
csin03009
]
Eukaryotic type
90S particles
Helicases
114302411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ABC_tran
T2SSE
AAA_30
FtsK_SpoIIIE
SRP54
AAA_7
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
114302411
NCBI-ProteinID:
XP_028103229
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVVDESSVSAKLAKSNGGIAAQGNNLINRWNGRPYSQRYYEILEKRKT
LPVWHQKEEFLQVLKSNQTLVLVGETGSGKTTQIPQFILDAVDIEAPDKRRKYMVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLER
YKVIVLDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNSAPLMKVP
GRLHPVEILYTQEPERDYLEAAIRTVVQIHAYEPPGDILVFLTGEEEIEDACRKITKEIG
NMGDACGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEGGTPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKLGEIMSEFPLDPQMSKMLVVSQEFNCSNEILSISAMLSVPNCFIRPKEAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNVRQQLVRIMARFNL
KQCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEFVLTSRNFIRTVTDVRGEWLVDIAPHYFDLANFPPCEARRVLEKLYKKREKERED
SRNRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagaggaagaggaaggtgagcttgttcgatgtggtcgatgagagctcagtc
tctgcaaaacttgcgaaatctaatggcggcatagcagctcaagggaacaacttgatcaac
cggtggaatgggcggccgtattcgcagaggtattacgagatattggagaagaggaaaacc
ctacctgtttggcaccagaaagaagagttcttgcaagttttgaagtctaatcaaacccta
gtcttggttggtgaaactggtagcggtaaaaccactcagattcctcagtttattcttgat
gctgttgatatagaggccccagataaacgcaggaaatacatggttggctgcacccagcct
cgtagggtagctgctatgtctgtttctcgtcgggttgctgaagagatggatgtaactatt
ggagaagaagttggttatagcatccgttttgaagactgcagtagtgcaagaacagttttg
aagtatttgacagatggtatgcttttaagagaagctatgacagatccgcttttggaacgt
tacaaagtgatagttcttgatgaggctcatgaaagaactttggcaaccgatgttttattt
gggcttttgaaggaagtattgagaaatagacccgacctgaaactagttgtaatgagtgct
actcttgaggccgaaaagtttcagggttatttcaatagcgcacctcttatgaaagttcca
ggaagactgcatccagtggagattttgtacacacaggaacctgagagggattaccttgag
gcagcaattcgtacagttgttcagatacacgcatatgaaccacctggtgacatacttgta
tttcttactggagaggaggagatagaagatgcatgtaggaaaataacaaaagaaattgga
aatatgggagatgcttgcgggcctgtgaaagcagtgccactgtattctacgcttcctcct
gctatgcagcagaagatatttgaacctgctcctccccccctgactgagggcggcactcct
gggaggaagattgtagtctcaacaaacattgcagaaacctctttgaccatagatggtata
gtttatgtgatagaccctgggtttgcaaaacaaaaggtctataaccctcgaatacgtgtt
gaatctttgttggtctctccgatatcaaaggctagtgctcaccaaagatcaggtcgtgct
ggaagaacccaaccaggaaaatgttttagactctacactgagaaaagtttcaataacgat
cttcagccacagacatacccagaaatactgcgatcaaaccttgcaaacacagttctcacc
ttgaagaaactagggatagatgatttggtccattttgattttatggatccccctgcccca
gagacattgatgcgcgcattagaggttttgaattacttgggagcgttggatgatgaaggc
aacttgaccaagctgggtgagatcatgagtgagttccccttggatccgcagatgtcaaag
atgcttgttgtcagccaggaatttaactgttcaaatgagattctgtctatttctgccatg
ctttcagtacccaattgctttatccggcctaaggaggctcaaaaagcagcagatgaagca
aaggctcggtttgggcacattgatggggatcaccttacgctcttgaatgtataccatgca
tacaagcaaaataatgaggatccatcttggtgttacgaaaactttgtcaaccaaagggca
ttgaaagctgctgataatgtgagacaacagctagttcggatcatggctaggttcaacctc
aagcaatgcagtacagattttaacagccgtgactattacatcaacatcagaaaagctatg
ctagctggatatttcatgcaggtggctcatctggagcgcactggacactatttaactgtg
aaggacaaccaggtggttcacttgcacccttcaaattgcctggatcataagccagagtgg
gtcatctataatgagtttgtcttaacaagcagaaatttcatccgcacagtaacagatgtt
cgtggggaatggttagttgatatagctccacactactttgaccttgcgaactttccacct
tgcgaggcaaggcgtgttcttgagaagctttacaagaaacgggaaaaggagagggaagac
agtaggaacagaaagtga
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integrated database retrieval system
