Camellia sinensis (tea plant): 114304019
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Entry
114304019 CDS
T07364
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114304019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114304019
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114304019
Spliceosome [BR:
csin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114304019
Complex B
114304019
Complex C
U2 SnRNP specific factors
114304019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-GeneID:
114304019
NCBI-ProteinID:
XP_028105005
LinkDB
All DBs
Position
Unknown
AA seq
778 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERSQPPQRLYVPPSSRSGGHDNYEDTDLDNIDYDDREPS
NAADEGGDGGGDDEIDPLDAFMEGIHEEMKAAQPPKVNEKLEKYSDDEDDDPMESFLKAK
KDVGLTLASDVLHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVLGKNKIEPIPALDHSS
IEYEPINKDFYEETPSISGMSEQDVVEYRNSLAIRVSGFDVPRPIKTFEEGGFSVELMKA
IAKQAYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGP
IGVICAPTRELAHQIYLEAKKFAKSHGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRL
IDMLKMKALTMFRASYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMARKVEK
LAREILTDPVRVTVGEVGMANEDITQVVQVVPSDAEKMPWLLERLPELIDNGDVLVFASK
KARVDEIESQLAQMGFKVAALHGDKDQASRMDILQKFKSGIYHVLVATDVAARGLDIKSI
KSVVNIDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSA
ELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGSSGRGVRGVDFGLGIGYSADSNNTSSST
VPNRSVAVGSLRTGMMAQFKSKFVSASSNSQNQGMNNNSSGTYANKRMVLPGFVSGGSIG
GDVNAAWTTNVSAPPPAPMSGGNPTNQSSMENANASQKNSESSRDKPRERRRSSGWDR
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagagaaagttcggattcgaaggcttcggcatcaatcgccaaacaacctacaac
ttcgaacgctctcaacctccacagcgactctacgtccctccttcatcccgctccggcggc
cacgacaactacgaagatactgacctagacaacatcgattacgacgaccgcgagccttca
aacgccgccgacgaaggcggcgatggtggcggtgatgatgaaatcgatcctcttgatgct
tttatggaggggattcatgaggagatgaaggcggcgcagcctcccaaggtgaacgagaag
ttggagaagtatagcgacgatgaggatgatgatccgatggagagtttcttgaaggctaag
aaggatgtagggttgacactcgcgtcggatgttcttcatgctgggtatgattcggatgag
gaagtttatgctgctgccaaggcggttgatgctggaatggtagagtacgattccgatgac
aatccaattgtgcttgggaagaataagattgagccgattccggctttggaccatagttcg
attgagtatgagccgattaataaggatttctatgaggaaacaccttctatctcaggtatg
agtgagcaggatgttgttgaatacaggaacagcctggctattcgtgtttccggttttgat
gttccaaggccaattaagacatttgaagagggtggattttctgtggagctaatgaaagct
attgcaaagcaagcctatgaaaagcctacgccaatacagtgccaagctttacccattgtg
ctctctgggagagacatcattggtattgcaaaaactggttcgggaaaaactgctgctttt
gtgcttcctatgattgtccatattatggatcagcctgaacttgagaaagaggagggtccc
attggagtgatatgtgcacctactagagaattggcacatcagatatatttagaggcaaag
aaatttgcaaaatcacatggtatacgtgtctctgcagtctatggtggaatgtccaagctt
gaacagttcaaagagctcaaggcaggatgcgagatagttgttgctactcctggaagattg
atagacatgctaaaaatgaaggcactgaccatgttcagagcatcttacctagtactagat
gaggctgatcggatgtttgaccttggatttgagccacaaataaggtccatcgttggtcag
attaggccagatcgtcaaaccttactattttcagcgacaatggcccgcaaagttgaaaag
ttagccagggaaattctcactgatcctgtaagagttactgtgggagaggtgggaatggcc
aacgaggatattactcaagttgttcaagtagttccttctgacgctgaaaagatgccttgg
cttcttgaaagactacctgaactaattgataatggcgatgttctagtttttgcttcaaaa
aaggctagagtggatgagattgaatcacaactggctcagatggggtttaaagttgcagct
cttcatggtgacaaagaccaagcttctcggatggatatattgcaaaaatttaaatctgga
atataccatgttcttgttgcaactgatgttgctgctcgtggccttgacattaagtcaatt
aagtcagtggtcaacattgatatagctagagacatggatatgcatgtccatcgaattgga
agaacaggccgtgctggtgacaaagatggtaccgcatacactcttatcacacagaaagag
gcaaggtttgcaggtgaattggttaacagtttgattgctgctggtcagaatgtgtctgcg
gaactgatggatcttgctatgaaggatgggagattcagatccaagcgtgatgcaagaaaa
ggaggtggaaaaagggctaaaggaaggggaggtggtagtagtggtcgaggcgtgcgtggt
gtggattttggtttgggcattggatatagtgcagactcgaataatacttcatctagcact
gtcccaaatcgttcagttgctgtcggttcactgagaactggaatgatggcacaatttaaa
agcaaatttgtgtccgcttcatctaattctcaaaatcagggcatgaacaacaacagttca
ggcacctatgccaacaagagaatggtgttaccaggtttcgtttctggtggttctattggt
ggtgatgtaaatgctgcttggacaaccaatgtgtcagctccgcctcctgctcccatgtca
ggaggaaaccccactaatcagagctccatggaaaatgcaaatgcaagtcagaagaactcc
gaaagttctagagataaacctagagaaaggcggagatcctctggttgggaccgttaa
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