KEGG   Camellia sinensis (tea plant): 114305451
Entry
114305451         CDS       T07364                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    114305451
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csin03019]
    114305451
   03036 Chromosome and associated proteins [BR:csin03036]
    114305451
Messenger RNA biogenesis [BR:csin03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     114305451
Chromosome and associated proteins [BR:csin03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     114305451
    COMPASS/SET1 complex (yeast)
     114305451
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_VPS8 PQQ_3 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_DCAF4 PQQ_2 Beta-prop_IFT140_1st KNTC1_N VPS11_N Cytochrom_D1 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 114305451
NCBI-ProteinID: XP_028106341
LinkDB
Position
Unknown
AA seq 332 aa
MAGGQPEREDKVSLDLTEEILQSMEVGMAFRDYNGRISSMDFHRTSNFLVTASDDESIRL
YDVANATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAF
GGYIRMFDARKYEKGPFDIFSVGGDVSDANVVKFSNDGRLVLLTTAEGHIHVLDSFRGTL
LFTFNVKPVLSNSTLEASFSTEGTFVISGSGDGSVFAWNARSGKEVASWMSTETEPPVIK
WAPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcggggggacagccggagagagaagacaaggtttcgttggatctcaccgaagaaata
cttcagagcatggaagtcggcatggcctttcgcgattataatggtagaatcagttcaatg
gattttcataggacatcaaattttctggtgactgctagtgatgatgaatccattcgactt
tatgatgttgccaatgctacgtgtttgaagacaattaatagcaaaaaatatggggttgat
ctagtttgctttacttcacatcccacaacagttatatactcttcaaagaatggctgggat
gaatcattgcggctcctctcattgcatgacaacaagtacttgcggtatttcaaaggacac
catgacagggttgtctccctaagcctgtgctctcgaaaagaatgctttatctctggctct
ctggatcgaacagttttactttgggatcaaagagctgagaagtgtcagggtcttttacgt
gtacaaggtaggcctgcaactgcttatgatgatcaagggcttgtctttgcaattgctttt
ggaggatacataagaatgtttgatgctcgtaagtatgaaaagggccctttcgatatattt
tctgttgggggagatgtctctgatgcaaatgttgttaaattcagtaatgatgggagactt
gtgcttctgactactgcagaaggacatattcatgttcttgattcattccgtggaactctt
ttatttacattcaatgtcaagccagttttaagcaattccactttggaggcatctttcagc
accgagggaacatttgttatatcaggttcgggtgatggtagtgtttttgcctggaatgct
cgaagtggcaaagaagttgccagttggatgagtactgaaactgaacctcctgtgataaaa
tgggctccaggaagcctaatgtttgtcactggttcttctgaattatcattttggattcca
gacttgtctaaattgggagcttacgtcggaagaaaatag

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