KEGG   Camellia sinensis (tea plant): 114305719
Entry
114305719         CDS       T07364                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
csin  Camellia sinensis (tea plant)
Pathway
csin03420  Nucleotide excision repair
csin04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:csin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    114305719
  09124 Replication and repair
   03420 Nucleotide excision repair
    114305719
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csin04121]
    114305719
   03400 DNA repair and recombination proteins [BR:csin03400]
    114305719
Ubiquitin system [BR:csin04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     114305719
DNA repair and recombination proteins [BR:csin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      114305719
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd EIF3I WDR55 NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SPT8 WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP
Other DBs
NCBI-GeneID: 114305719
NCBI-ProteinID: XP_028106655
LinkDB
Position
Unknown
AA seq 476 aa
MEKGLKIGGGGWDKDARTMWKEIGDREFGKLRPNLFTNGIRSTRLSSLQLSNYKDIISPH
RGFVNSLQVDLTEGRYLLSGASDASVAIYDVQRATNYEGGGLLAKHKSIINIDKQHDHGH
KYAISSAIWYPIDTGLFITGSYDHHINVWDTNTTQVVVNFKMPGKVYRTAMSSLATSHML
IAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTAEWSTSNEWVLITGGCDGAIRFWDIRR
AGCFRVLNQSHSQLGRRPPLLERAAMNKVSSSKSSSTGQSSSVKARAPQRKMAHGNGSKQ
SAVSKIPSQVKSSARQRLHPGMLSSQDHATAHYGAVIGLKVTEDGMYLLSAGSDSRLRLW
DIESGCNTLVNFETVRLQTGKAIQLATTQDSALVFVPCMTSVKVFDVWSGKTVLSFRGHY
EHVNCCWYSLQDQELYTGGNDRKILVWSPTKFVSDELDEWIKRGKASALDQDNWSD
NT seq 1431 nt   +upstreamnt  +downstreamnt
atggaaaagggtttgaagattgggggtggtgggtgggacaaagatgcgaggacgatgtgg
aaggagattggtgatagagaattcggcaagctcagacctaatttgttcaccaatggcatt
agatccactcgactctcctctctccaactctccaactacaaagatatcatctctcctcac
cgaggcttcgtcaactctcttcaggttgatttgacagagggtcgatatttgctatccggt
gcatctgacgcatcagttgctatctatgatgttcaacgtgcaaccaattatgagggaggt
ggtttgcttgcaaagcataagtccataattaatatcgacaaacaacatgaccatggacat
aaatatgccatatcctcagccatatggtatcccattgacacgggtttgttcatcacaggt
tcatatgaccatcacatcaatgtctgggatacaaatactacacaggttgtagtgaatttt
aaaatgcctggaaaggtttataggactgctatgtcgtcattggcaacatcccacatgcta
attgctgctggaactgaagatgttcaagtgcgcctctgtgatattgcttcaggggcattt
gctcatacattgtctggtcatcgtgatggtgtaatgacagcagagtggtctacttctaat
gagtgggttttgataactggaggatgcgatggtgcaatacgtttttgggacatcagacgt
gccggatgttttcgtgttttaaatcagtcacactctcagctaggaagacgtccgccactt
ctagaacgtgctgccatgaataaggtttcatcttcaaaatcctcgtcaacaggccagagc
tcatctgtaaaagcgcgtgcaccgcagcggaaaatggctcatgggaatggttcaaagcag
tctgctgtcagtaaaattcccagtcaagtcaaaagttctgcaaggcagagattacatcca
gggatgttatctagtcaggatcatgccactgctcattatggagctgttattggattaaaa
gtaactgaagatggcatgtatcttctgagtgcaggttctgattcaaggttaaggttgtgg
gacattgaatctggctgcaacacgctggtgaactttgaaactgttcgcctacaaacaggc
aaggctatccagttagccacaactcaagattcagcccttgtctttgttccatgtatgaca
tctgtcaaagtatttgatgtgtggtcaggaaagacagttctgtcatttcgtggtcactat
gaacatgtgaactgttgctggtatagcttgcaggaccaggaattatacactggtggtaac
gacaggaaaattctagtttggtctccaaccaaatttgtttctgatgaactggatgaatgg
atcaagagagggaaggcttctgctctggatcaggataactggagtgattga

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