Camellia sinensis (tea plant): 114306864
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Entry
114306864 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114306864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114306864
03012 Translation factors [BR:
csin03012
]
114306864
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114306864
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114306864
Translation factors [BR:
csin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114306864
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
nSTAND3
AAA_22
ATPase
T2SSE
PhoH
Dicer_dimer
ABC_tran
AAA_16
AAA_23
Myosin_head
Motif
Other DBs
NCBI-GeneID:
114306864
NCBI-ProteinID:
XP_028107992
LinkDB
All DBs
Position
Unknown
AA seq
1170 aa
AA seq
DB search
MNSKSNSRLGFLLAAACGKQSSLLHALFLSNQRRRFATARPDQDLFSFPALPTSNNAFPS
LSRIFSTFLFSGRRAFCGYAAEQFSDDEYECDYDNHKASSSVANIDEWKWKLNLLLHNEK
DQEIVSRDKRDRRDYEQISNLAKRMGLYCELYGKVVVASKVPLPNYRPDLDDKRPQREVV
IPLSLQRRVEGLLQEHLDRMQLSSERVSGTSVDTKATDQVEDVNPDDDPDSFLDGSVMEK
VLQRQSLRMRNMQRTWQESPEGRTMLDFRRSLPAFKEKERLLQAIAQNQVVVISGETGCG
KTTQLPQYILESEIESGRGSFCNIICTQPRRISAMALPRMSVYERGEPLGESVGYKVRLE
GMKGRNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRR
DLRLILMSATLNAELFSNYFGGAPTIHIPGFTYPVKAHFLEDVLEMTGYKLTSFNQIDDY
GQEKMWKTQRQLVPRKRKNQITALVEDALSKSNFENYSARARDSLSCWIPDCIGFNLIEA
SLCHICRKERPGAVLVFMTGWEDISCMRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLI
FEKPPPNVRKIVLATNMAEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASA
RQRRGRAGRVQPGECYHLYPQCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGDFLS
AALQPPESLAVQNAVDFLKMIGALDENENLTHLGGFLSMLPVDPKLGKMLIMGAIFSCFD
PILTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAERGGSAY
EYCWRNFLSAQTLQAIHSLRKQFSFILKGAGLLDADAGTNNRLSHNQSLVRAIICSGLFP
GISSVVHRETSMSFKTMDDGQVLIYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGV
SDSILILFGGNLNHGVLAGHLKMLEGYIEFFMDPSLLDCYVKLKEELDKLLQKKLQDPSL
DIQKAGKYLMLAVQELVSGDQCEGRFVFGRESKKPKESSDSDRFTRDGTNPKSLLQTLMM
RAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAALEALAWLTQTSDKT
NDEDDNSPPDVTDNMLKLLGKRRRSKRRSG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaactccaaatccaattcgaggctagggtttctcttagcagcagcatgtggcaaacaa
tcctcgcttcttcatgctctcttcttgtccaatcaaaggaggaggtttgcaactgctagg
ccagatcaggacttgttctcgtttcctgctcttcccacctccaataacgcctttccctct
ctctccagaattttctctacctttttattctcgggtcgccgagctttttgcggctacgcc
gctgagcagttctcagacgacgagtatgaatgcgactacgacaatcataaggcatcttct
tctgtggccaacattgatgagtggaaatggaaacttaacttgctattacacaatgaaaag
gaccaggagattgtgtccagagataaaagagacaggagagactatgagcaaatatctaac
cttgccaaaaggatggggctttactgtgaattgtatggaaaagtggtggttgcgagcaag
gttcctcttcccaattataggccagatctcgatgacaagcggcctcaaagggaggtggtt
atcccactaagcttgcaaaggagagtagagggtctgctgcaggaacaccttgatagaatg
cagttgagttctgaaagggtcagtggcacttcagttgacactaaggccactgatcaggtt
gaagatgtaaatccagatgatgatcccgattctttcttagatggctctgttatggaaaag
gttcttcagaggcagagtttgcgaatgcgtaatatgcagagaacgtggcaggaatcacca
gaaggcaggacgatgctagactttcggagatctctgcctgcattcaaggagaaggaaagg
ctgctccaagcaattgcacaaaatcaggttgttgtaatttctggggagactggatgtggt
aaaactacccaacttcctcagtatatattggagtcagaaatagaatctggtcgtggatca
ttctgtaacataatttgtacacaacctcgacgaatatcagctatggcgttgccaagaatg
agtgtctacgagagaggagagcctcttggtgaatcagttggctataaagttcgattagag
ggaatgaaaggaagaaatacccatctgcttttttgtaccagtggcattttgcttcgacgt
ttgttgagtgaccgcaacttgaatggtataacccatgtgtttgttgatgaaattcatgag
cgaggcatgaatgaagacttcctattgattgtgttgaaggatcttcttccacgacgtcga
gatttgagattgattttaatgagtgctactttaaatgctgagttattttccaattatttt
ggaggagcaccaacaatccatattccgggttttacatacccagtgaaagcacactttctg
gaagatgtattggaaatgactggatataagttgacttctttcaaccaaattgatgattat
ggtcaagagaagatgtggaaaacacaaagacagctagtgccacggaaaaggaaaaatcag
atcactgctcttgttgaggatgctcttagtaaatcaaacttcgagaattatagtgcaagg
gctcgtgattcactgtcatgttggatacctgattgcattggttttaatcttattgaggct
tctttatgccatatatgtcggaaggaacggcctggtgctgtgttagtatttatgactggc
tgggaggacattagctgtatgagggatcaacttaaagctcatcctctcttaggcgaccct
aacagggttttgctccttacttgccatggttcaatggcaacatctgaacaaaaactcata
tttgagaagccgcctcctaatgttcgtaaaatagtacttgctacaaatatggcagaggca
agtattacaattaatgatgttgtttttgtcattgattgtggaaaagcaaaggagactact
tacgatgcattaaataatactccatgcctcctaccttcatggatatcacaagcttctgct
cggcaaagacgaggtagggctggccgcgtgcagccaggcgagtgctaccatctatatcca
caatgtgtttatgaagcgtttgctgaatatcaacttcctgaacttctgagaactcctttg
aattctctctgtttgcaaataaaaagtttgcaggtgggcagtataggagactttttgtca
gctgctctgcagccaccagaatcattggctgtccaaaatgctgttgattttttgaagatg
attggagcattggatgagaatgaaaatctcacacatcttggagggtttctgtcaatgctg
ccagtagatcccaagctagggaaaatgttaataatgggtgctatcttcagttgctttgat
cctattctgacaattgtggctggacttagtgtcagggatccttttcttttgcctcaagat
aaaaaagatttagcaggtacagcaaagtccagattttctgcaaaggactatagtgatcat
atggcacttgttcgtgcatatgaaggatggaaagatgcagaaagaggaggatcagcatat
gagtactgctggaggaatttcctttctgcccaaacacttcaagccatccattctcttcgg
aagcaatttagcttcattttgaaaggtgctggattgctagatgctgatgctggcactaac
aatagattaagtcacaaccagtcattggttcgtgcaattatatgttctggcctctttcct
ggaatatcatctgtagtgcacagggagacatccatgtccttcaaaacaatggatgatggc
caggtcttaatttatgctaattcggtgaatgcacgttaccagactattccgtacccatgg
ctagtctttggtgaaaaagtgaaggtcaatactgttttcatacgtgattctactggtgtt
tctgattctattctgatcctttttggtggtaatctcaaccatggagtcttggccggacat
ttgaaaatgttggaaggctatattgaattcttcatggatccaagtctgttagactgttat
gtgaagcttaaggaggaacttgataagcttctgcaaaagaagctccaagatcctagcctc
gacatccagaaggcaggcaagtacctcatgctcgctgttcaggagctagtatcaggagac
caatgtgaagggaggtttgtatttggccgtgaaagcaagaagcccaaggagtctagtgac
agtgatagatttacaagagatggaacaaaccctaagagcttgctgcaaacactcatgatg
cgggcggggcactcccctccaaagtacaaaacaaagcatctcaagacaaatgaattcaga
gcgttggtagagtttaaaggaatgcaatttgtggggaagcccaagaaaaacaaacagctt
gcagagagggatgctgctttagaggcattagcttggttgactcagacctctgacaaaact
aatgatgaggatgataattccccacctgatgtcactgacaacatgttgaaactccttggt
aagcgcagaagatcaaagcggcgctcgggttga
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integrated database retrieval system
