Camellia sinensis (tea plant): 114309643
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Entry
114309643 CDS
T07364
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114309643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114309643
Enzymes [BR:
csin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114309643
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114309643
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114309643
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
114309643
NCBI-ProteinID:
XP_028111232
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MLKGASSLPRLPLPSVSNFLCRRIFLSKMSTTAATPLCPKFIPVEHSEITSISKPDGLKF
RLVSYNILAQAYAKSEQFPHSPPPCRKWKTRSQAILTLIKSLRADFLCLQEVDEYDSFYK
GNMESHGYASIYIQRSGKKPDGCGIFYKHNIAELVVEEKIEYNDLVNSIQDGTAMHADKD
NDTLASVNKDTEPNKGLPQKDTDGHRGDPNDPCVRLKRDCVGIMAAFKLKDPSDHVVIVA
NTHLYWDPNWADVKLAQAKYLISRLAQFKTLVSDKFECIPSVIVAGDFNSTPGDKVYQYL
VSGSSSMGGSPECFEDVPIPLCSVYALTRGEPPFTNYTPGFTGTLDYIFFSPSGDNIKPV
SFLELSEPESPDVLGGLPNYHHPSDHLPIGAEFEVV
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagggtgcttcctctcttccccgcctccctctcccaagtgtgagcaattttttg
tgcagaagaatttttttgagcaaaatgagcacgacagcagcaacgccattatgtccgaaa
tttattccagtggaacatagtgaaattacttcaataagtaaacctgatggcttgaaattc
cgtcttgtttcatacaacattttggcacaggcatatgcaaagagtgagcaatttccacac
tctcctccaccttgtcgcaagtggaaaactcgttcccaggcaattttgactcttatcaag
agcctcagggcagattttctttgcttgcaggaagtggatgagtatgatagcttttacaaa
ggaaatatggagagccatggctatgcaagtatctatattcagagaagcgggaagaagcct
gatggttgtgggatattttataagcacaacatagcagagctggttgtagaggagaaaata
gaatacaatgatcttgtaaactcaatccaagatggaacagctatgcatgcagacaaagat
aacgatactctagctagtgtaaataaagatactgaaccgaacaagggtttaccgcagaaa
gacactgatgggcatcgtggagatcccaatgatccttgtgtaagattaaaacgtgattgt
gttggtatcatggctgcctttaaacttaaggatccttctgatcatgtagttattgtggca
aacacgcacctttattgggatccaaattgggcagatgtaaagcttgcacaggccaaatac
cttatttcacgcttagctcaattcaaaacactagtatctgacaaatttgaatgtattcct
tctgtaattgtggctggtgacttcaattcgacccccggagataaggtatatcaataccta
gtttcaggcagctcttcaatggggggatcaccggaatgttttgaagatgtacctattccc
ttatgcagtgtctatgcattgacaaggggagaaccaccattcactaactacacccccggt
ttcaccggtactctcgattacatattcttttctccatctggtgataatatcaaaccagtc
agcttccttgaactttcagaaccagaatcccctgatgttcttggtggattgccaaattat
catcacccaagtgatcatttgccaattggtgctgaatttgaagttgtctga
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