Camellia sinensis (tea plant): 114312301
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Entry
114312301 CDS
T07364
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114312301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csin03021
]
114312301
03019 Messenger RNA biogenesis [BR:
csin03019
]
114312301
Transcription machinery [BR:
csin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114312301
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114312301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
114312301
NCBI-ProteinID:
XP_028114321
LinkDB
All DBs
Position
Unknown
AA seq
693 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDVGPANPTASVPVVQSDAVAGGGASNNASAPPAAAEPPQGNPAG
RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI
KECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQMTSYNYGNSNRFFQNRNSNY
PQQTEKPQFPQGPNAANQATAAKSSTTESPNMQLQQQVQQSQQQVGQTQIQNFPNGQQNQ
GNKSSTPLPQGISRYFIVKSCNRENLELSVEQGVWATQRSNEAKLNEAFDSVENVILIFS
VNRTRHFQGCAKMTSKIGGSVGGGNWKYAHGSAHYGRNFSVKWLKLCELSFHKTRLLRNP
YNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISVTAETKREEEKAKGVINSDN
GAENPDIVPFEDNEEEEEEESEEEDESYGQAFGAAAAQGRGRGRGMMWPPHMPFARGARP
LPGMRGFPPVMMGADGFSYGAVTPDGFPMPDLFGVGPRPFAPYGPRFPNDFAGPASGMMF
HGRPPAGGFGMMMGPGRAPFMGGMGIGAAPPARAGRPVGMPPMFPPPPSQPLQHSNRPVR
REQRGPANDKNDRYSAGSDQGKGQEMGGSGADDETQYQQGGKNQEDQFGAGNSFRNDESE
SEDEAPRRSRHGEGKKKRRSLEADATGGSDQQT
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggagaaggaggtctgagcttcgatttcgagggcggcctcgacgtaggtcca
gctaaccccaccgcatccgtaccggtagtccaatccgacgccgtcgccggcggtggagca
tcaaacaacgcctccgcgccccctgccgcggcagaaccgccgcagggaaaccccgcggga
aggcggagcttccggcagacggtgtgccggcactggctccggagcctttgtatgaagggc
gacgcctgcgggttcctccaccagtatgacaagtctcggatgccggtgtgccggttcttt
cgtctttatggagagtgccgagagcaggattgtgtgtacaagcacaccaatgaggatatc
aaggagtgcaatatgtacaagttgggattttgtccaaatggtcctgattgccgctatagg
catgcgaaactgcctggacctccccctcctgtggaagaagtccttcagaagattcagcag
atgacttcttacaattatggcaactctaaccggttctttcaaaaccggaattctaattat
cctcaacaaacagaaaaaccgcagtttccacaaggtccaaatgctgccaatcaagccaca
gctgcaaaatcttcaacaacagaatcccccaatatgcagctgcagcaacaagttcaacag
tcccaacaacaggtcggccagactcaaatacaaaattttccaaatggccagcaaaatcaa
gggaataaatcttctacacccctgcctcaaggaatatctaggtattttattgtcaaaagt
tgcaatcgtgaaaatttggaattatcggtagaacaaggagtatgggcaactcaacggagt
aatgaggctaaactgaatgaggcttttgactccgtggaaaacgttatcttgatcttttca
gtcaaccggactcgacatttccagggttgtgcaaaaatgacatctaaaattggtggctct
gttggtggagggaactggaagtatgcacatggaagtgctcattatgggcggaatttctct
gtcaaatggttaaagctctgtgaattgtcgttccacaaaactcgtcttttgaggaatcca
tataatgagaacctaccggtgaagattagcagagattgccaggagctagagccttctgtt
ggtgagcagttggcttccttgctctaccttgagccagatagtgaactcatggcaatctca
gttacagcagaaacaaagcgtgaggaggaaaaagcaaagggagtaatcaattcggacaat
ggggctgagaacccagatattgtcccatttgaggacaatgaagaggaggaagaggaagaa
agcgaggaagaggatgagagctatggccaagcttttggggcagctgccgctcaaggcaga
ggaaggggccggggaatgatgtggcccccacatatgccttttgcacgtggagcccggcct
ctccctgggatgcggggctttccccctgttatgatgggtgccgatggattttcatatgga
gctgtcacgcccgatggttttcccatgcccgatctttttggtgtgggcccacgccctttt
gctccgtatggtccaagattccccaatgactttgcaggtcccgcatctggcatgatgttt
catggccgaccaccagctggcggatttgggatgatgatgggtccaggacgagcacctttt
atgggtgggatgggcattggagctgcacctccagcaagagccggtcggccggttggtatg
ccgccaatgtttccaccaccaccgtcacaaccgttgcagcactcaaaccgtccagttagg
agggaacagaggggaccggctaatgacaagaacgacagatacagtgccggttcagatcaa
ggcaagggtcaagagatgggtggttcgggagctgatgacgagacgcaatatcagcaagga
ggaaaaaatcaagaggatcaatttggtgctggaaacagctttaggaatgatgagagtgaa
agtgaggatgaagcgccaagaaggtcgagacatggagagggaaagaagaagaggcggagt
ttggaggccgatgctactggtggctctgatcaacaaacttag
DBGET
integrated database retrieval system
