Camellia sinensis (tea plant): 114312427
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Entry
114312427 CDS
T07364
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114312427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114312427
Enzymes [BR:
csin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114312427
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114312427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
114312427
NCBI-ProteinID:
XP_028114453
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MDLIIAFDWASRNLHRHRAAAMWKSHRRRNAAPRWDNGTKWCIRKLVGLNGLAFYHIGFT
VPPPRRCATLQLLPTTHDVTVKHFENLVYIRVKGESSSVQQLIGHTESNNDRGLLMKEVK
DGVRKEEEMKIEAAVGFRQKLIVGHNCFLDIAHIYSKFLGSLPSTAEEYVSSVHKYFPYI
NDTKVLLNANDVLRAMMKKGSTSLSKAFAFLCPEIASSVEGSRLGLKPHVNIEVQVDDSR
SSNWNSGAKHEAGYDAFMTGCIFAQVCSHPGFNFKLHPPFTNLTHDEKLQKHINLLYLSW
INSDIIDLRTGKQTAESSYNSLKFRYPKIVFSNICLIWGFPSKLKAREIRECISKVFGPS
SVSSIYHLDETAVFVQFSKEEYVSVFLELKETLERNNDPSSVLHPLSKLLEGGNTRASSY
EFYKEICSSSISKVLFADQAESIGIKWKTKLLGENEMASFRNSTGESESGRMNSVIDDLS
CSHFLVDLC
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggacctcatcatcgccttcgattgggcttctcgaaatcttcacaggcatagagccgcg
gcgatgtggaagagccacaggaggcgcaacgcggcacctcgttgggataatgggactaaa
tggtgcataagaaaacttgtaggactaaatggtttagctttctaccatataggatttact
gttcctcctcctcgccgttgtgctactctgcaactccttccaacaacccacgacgttact
gtgaagcattttgaaaaccttgtttacattcgtgtaaagggtgaatcttcctccgtacaa
caattaattgggcacactgaatcaaacaatgacaggggcttacttatgaaagaagtcaag
gatggggttcgcaaggaagaagagatgaagatcgaagctgcagttggatttcggcagaag
ttgatagttggtcacaattgctttcttgatattgcgcacatatatagcaaatttttaggt
tctcttccttcgactgctgaagaatatgtctcttctgttcacaaatactttccatacatc
aatgacacaaaagtacttttaaatgcaaatgatgtacttagagctatgatgaagaagggc
agcacatcactgtccaaagcatttgccttcttgtgtccagaaattgcttcgagtgtcgaa
ggatctagattgggtctcaagccacatgttaacatcgaggttcaagtggatgacagcagg
tcctcgaactggaactctggagctaagcatgaagctggctatgatgcttttatgacgggt
tgtatttttgcccaagtatgcagtcatcctgggttcaatttcaagcttcatccacccttc
acaaatttgacccatgatgagaagctccaaaagcacattaatcttctttatttaagctgg
attaacagtgacattattgatctgaggactggtaagcagactgcagagtcttcatataac
agcctaaaatttaggtatccgaagattgtcttttcaaatatttgtttaatttggggattt
ccatccaaactcaaggcaagggagattagggaatgcatctctaaagtctttggcccaagc
tcggtttcttccatctatcacttagatgaaactgctgtgtttgttcagtttagtaaagaa
gaatatgtctctgtttttctggagttgaaggaaaccttggaaagaaacaatgatccaagc
tcggttttgcatccgctctcgaaactcctggaaggtggaaacactcgagcttccagttac
gagttctataaagagatttgcagttcatcgatttcgaaagtattgtttgctgatcaggcg
gagtcaattggtattaaatggaagaccaaattgttgggagaaaatgaaatggcttctttt
cgaaattctaccggcgaaagtgagtcgggaaggatgaacagtgtgatagatgatctatcg
tgcagccatttcttggttgacctttgctag
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