Camellia sinensis (tea plant): 114312496
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Entry
114312496 CDS
T07364
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
csin
Camellia sinensis (tea plant)
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114312496
Spliceosome [BR:
csin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
114312496
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
UTP6_C
TPR_7
TPR_MalT
TPR_12
TPR_2
Motif
Other DBs
NCBI-GeneID:
114312496
NCBI-ProteinID:
XP_028114536
LinkDB
All DBs
Position
Unknown
AA seq
860 aa
AA seq
DB search
MGDSETVVAQTSAVTGYTSAGYSSTDYGNTNSDSVPDAGAVADVASGELAASAATTTAGE
LPATAASVEDAANTIPNVSNLGDEAYSRDLNYSLQGAPITHYESKPSYEVADASENLSGP
TNTSGDSCQVAGYDSTINGHDVSDARNIAAGGISENGNPSDDGHGSTSVLQPVDGSVLSA
DEERLWSIVRANSLDFNTWTALIDESEKVAEENILKIRKVYDAFLAEFPLCYGYWKKYAD
HEARVGSIDKVMEVYERAVQGVTYSVDIWLHYCVFAISSYGDPETVRRLFERGLAYVGTD
YLSFPLWDKYIEYEYMQQEWARLAMIYTRILENPNQQLDRYFNSFKELAGSRPLSELRTA
EEATVASVSNSEARAQEIDLEVHPNAVEQSPKPVSAGLTEAEELEKYIAIREEMYKKAKE
FDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIEGGDDFNKVVKLYERCLIACANY
PDYWIRYVLCMETSGSMDLANNALARATQVFVKRQPEIHLFAARFKEHSGDIPGARSAFQ
LVHTEISPGLLEAIIKHANMEHRLGNLEDACSVYEQAIAIEKGKEHSQTLPFLFAQYSRF
LHLVSSNVERSREVLVQGLENVQLSKPLLEALIHLESIQQPPKQVGYLDSLVEKFLVPSP
DNLNIASIAEREELSSIFLEFLDLFADAQSIKKADDRHAKLFLHHKSTSESKKRNAEDIL
VSDKTKVAKSYSGVPTSAPSVMGAYPSVQNQWAAGYGLQPQAWPQATQTTQAQGQQWNPG
YTQQAAYGAYGSYGSTYAPPQLPASVPQNAAYGAYPSTYPVQHAYPQQNYAQPATSAAAL
TPAQPPASVAAPQAYYGSYY
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtgaaactgtggttgctcaaacatctgctgttacggggtacacatctgct
ggctattcttcgactgattatggtaacaccaactcagattctgttcctgatgctggcgct
gttgctgatgtggctagtggagaattagctgcatctgctgccacaacaactgctggagag
ttgcctgctactgctgcttccgtggaagatgctgctaataccattcctaatgtttctaat
ttaggtgatgaagcatacagtagagacctaaattattccttgcagggagctccaattacc
cattatgagtctaagccgtcatatgaagtggctgatgctagtgagaatctctcgggccct
acaaacacttctggggattcttgtcaagttgctggttatgattctaccataaatggccat
gatgttagtgacgcaagaaatattgcggcgggtggtataagtgagaatgggaatccatca
gatgacggtcatggatctacttctgtgcttcagccggtggatgggtctgtgttgtcggct
gacgaagaacgattgtggagcatagtgagggctaattccttagattttaacacgtggact
gccctaattgacgagtcagagaaggtggcggaggaaaatattttgaaaatccggaaagtt
tatgatgcctttttagcagaatttcctttgtgttatggttattggaagaagtatgccgat
catgaggcacgtgtaggctctattgacaaagttatggaggtgtatgaaagagctgttcaa
ggagtgacatattctgtggatatttggttgcactattgtgtatttgccataagctcatac
ggagatccggagactgttcgaaggctgtttgagcgaggattagcatatgttggtacagat
tacctatctttccctctttgggataaatatattgaatatgaatacatgcagcaggagtgg
gcccgtcttgccatgatttacacacggatattagagaatcctaatcaacaactggatcgc
tatttcaacagcttcaaggaattagctggaagtcgacctttgtcggagttgaggactgct
gaggaagcaactgttgcatctgtttcaaattctgaggctagagctcaagaaattgatcta
gaggttcatcctaatgctgtggaacaatctcctaaacctgtaagtgctggcctaacagaa
gctgaggagttggagaaatacatcgccattagagaagagatgtataagaaagctaaagag
tttgattcgaagatcattggttttgaaacagctatcaggaggccctactttcacgtgcgg
cccctcaatgttgcagaacttgaaaattggcataactatcttgactttattgaaggagga
gatgactttaacaaggttgtcaagttatatgaaagatgcctaattgcttgtgcaaattat
ccggattattggatacgatatgttttgtgcatggaaaccagtggaagcatggatcttgca
aataatgcacttgctcgtgctactcaagtctttgtcaagagacaaccagagattcatctt
tttgcagctcgttttaaagagcatagtggggatattccaggagctcgatctgcctttcaa
cttgtacatactgaaatttcccccggtcttttagaagctattattaagcatgcaaacatg
gaacatcgcctgggaaatctggaagatgcttgttctgtatatgaacaagccattgccatt
gaaaaaggaaaagaacattcccaaactttgcctttcttgtttgcacaatactctcggttc
ttacatttggtttccagcaatgtagaaagatctcgggaagttcttgttcaaggacttgag
aatgtccagctgtcgaaacctcttctggaggctttgatccatttagaatcaattcaacaa
cctccaaaacaagtgggatatttagattcattggttgagaagttcttagttccaagtcct
gataacctgaatattgcaagtatcgctgagagagaagagttatctagcatttttttggag
tttttggatctctttgcggatgcacaatctatcaagaaggctgatgatcggcatgccaag
ctcttcttacaccacaagagcacatcagagtcaaaaaaacgtaatgcagaggatattcta
gtttcggacaaaacaaaggtagccaagtcttactctggtgttcctacatctgccccatca
gttatgggtgcatatccaagtgtgcaaaaccaatgggcagcaggctatggcttacagcct
caagcttggccacaagccacacaaaccacacaagcccaagggcaacagtggaatcctggc
tatacccaacaggctgcatatggggcatatggtagttatggaagcacctatgcacctcca
caactaccagcttctgtaccgcagaatgctgcttatggtgcttatccttctacatatcca
gtccagcacgcctatcctcagcaaaattatgcacaaccagcaacatcagcggcagcttta
actccagcacaaccccccgcttcagttgccgctcctcaggcctactatggaagttactac
tga
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