Camellia sinensis (tea plant): 114317892
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Entry
114317892 CDS
T07364
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114317892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114317892
03009 Ribosome biogenesis [BR:
csin03009
]
114317892
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114317892
Spliceosome [BR:
csin03041
]
Complex A
U1 snRNP components
U1 related factors
114317892
Complex B
114317892
Ribosome biogenesis [BR:
csin03009
]
Eukaryotic type
Pre-60S particles
Helicases
114317892
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Transformer
Motif
Other DBs
NCBI-GeneID:
114317892
NCBI-ProteinID:
XP_028120483
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MATAEPAPASLGPRYAPEDPTLPKPWQGLIDGSTGLLYYWNPETNITQYEKPSSLPPPLP
PGLPSSVSTPKLAPIPSARMMQSNGVGQPGQQMTQTPQQQGQQTDSSQHPHLMPQIAQQH
SSHLAQAGQQQGSQLAQAMQQQGHLTPQQLGQQTIQQPNQQVLLQSGQQMPQQSAQQMPQ
QSMLQMQQQSMQQIQMPMYQGSQTGQSQGHQFTHQQMQYMAYQQSNLPQGQQNSLQQMQR
TVQGHLLPRQQEQKAGFQHREDVDSQQGKQIGFSPPQIQQSGGPSVQNVPVGTNSIQMQQ
MGVQTGQAQPFGSSSLNMQQHGSLVPLLQHGPRFQSQLDSTIMHSQQPSAVPVNLKMGFE
ENASRRAGIEYYLNASNDGTAMVPQQPKLVVLPMARNQQEMRVGGATLPNVPPGIAGGLN
SVAGPALHNIYGHAASGPGFPNNAMMRQPPMIMESADAIDLSPVDVYCQKHEVTATGGDV
PAPLMTFEATGFPPEILKELHFAGFSSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGYL
IPAFILLRRRRNNPQNGPTVLVLAPTRELATQIQDEVLKFGRSSRVSCTCLYGGAPKGLQ
LKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIP
PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKQRRL
EQILRAQEQGSKVIIFCSTKKLCDQLARSIGRNFGAAVIHGDKSQGERDWVLNQFRSGKS
PILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAYTFFSDQDWKY
AGDLVKVLEGADQLVPPEVREMALRGGPNFGRDRGGPNRFETAGVRWDSGGHGGMRDGGF
GGRSGMRDGKFGGHGGMRDGNFGVRGGMRDGNFGGMRENSFGGRGGMRDGIFGGRGGMRD
GGFGGRIGMREGSFGGRGGMRDGNFGGRGGGHVGWDRNERAPHDRYNVDGRGRGYGRGSG
RFDNRRDVAHRSRGRSYSSSPERVRTWGYSRSRSRSRSWSRSRSQSRSRSWSRSRSPSCS
RSRSRSRSRDRRERPRKTKFDQMEPSMPVFGPPEARMSPMSPGTQANAISGVELPGQLPP
VENVEPEHLEAAADTHTI
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgcagagccagcacctgcatcccttggtcctcgttatgcgcctgaggatcct
actctgccaaaaccctggcagggattaattgatggaagcactgggcttttgtactactgg
aatcctgaaacaaacatcactcagtatgaaaagccatcctctttgcctcctccattgccg
ccagggttgcctagctcggtatctacacccaagctggctcccataccaagtgctcgaatg
atgcaatcgaatggtgtgggccagccggggcaacaaatgacacagacgccacaacagcaa
gggcaacaaacagactcgtcacaacatccccatctaatgccacaaattgctcaacaacat
agttcacacttagcacaagccggacaacaacagggatcacaattggctcaggccatgcaa
cagcagggacatttaacaccacaacaacttgggcaacaaacaatacagcaaccaaatcag
caagttttattgcagtcaggacagcaaatgcctcagcagtcagcacagcaaatgccacaa
cagtcaatgctgcaaatgcaacagcagtcaatgcagcaaatacaaatgccaatgtatcaa
ggctcacaaacggggcaatcacaggggcatcaatttacacatcaacagatgcagtacatg
gcatatcagcagagcaaccttccgcagggccaacaaaattcgctgcaacagatgcagcgt
actgtgcaggggcatctattaccccgtcaacaggagcagaaagcaggattccagcacaga
gaagatgttgattctcaacaaggaaagcaaattgggttctcccctccacagattcaacaa
tctggtgggccatctgttcaaaatgttccagtgggaactaattccattcagatgcaacaa
atgggtgtgcaaactggtcaagcacaaccatttggtagctcctctctcaatatgcaacaa
catggctctctggttccattgctgcaacatggtcccaggtttcaaagtcagttggactca
acaataatgcatagccaacaacccagtgcagtccctgtcaatttaaagatgggttttgaa
gaaaatgcatctagaagagctgggattgagtattacctcaatgctagcaatgatgggact
gctatggttccccagcagccaaagcttgttgtattacccatggcgagaaatcaacaggag
atgagggtgggtggtgctacacttcctaatgtcccacctggtattgctggtggactaaac
tctgtagcagggcctgccttgcataacatttatggtcatgcagccagtgggccaggcttt
ccaaacaatgctatgatgaggcagcctccaatgattatggaatctgcagacgctattgat
ctctcgccagttgatgtatattgtcagaagcatgaagtcacagcaacgggtggtgatgtt
ccagctcctctcatgacgtttgaagccactggctttcctccagagatacttaaagagttg
cattttgcaggtttctcgtctcccacacccattcaggcgcaaacatggccaattgcacta
caaaatagggacatagtggctattgccaaaaccggatctggaaaaacattgggctatctg
atcccggcattcattcttcttaggcgacgccgtaataatcctcagaatggcccaacggtt
ttggtcttagctccaacccgagagcttgccacacaaatacaagatgaggtcctcaagttc
ggtcgatcttcaagggtctcttgcacatgcttgtatggtggagctcctaagggtctacaa
ttaaaagaattggatcgaggggcggatattgtcgtggcaactcctggtcggctcaatgac
atccttgaaatgaagaaaattgattttgggcaagtttcccttcttgtgcttgacgaagct
gatcggatgcttgacatgggttttgaaccccaaatacgtaagattgtgaatgagattcct
ccccgacggcaaactcttatgtatacagcgacctggcccaaggaagtgagaaaaatagca
agtgatcttcttgttaatcctgttcaggtgaacataggcagtgtcgatgagcttgctgca
aataaatctattactcagtatgttgaagtagtccctcaaatggagaagcagaggcgcctg
gagcagattcttagggcccaagaacagggttctaaggtcattatattctgttcaacgaaa
aagttgtgtgaccagcttgcacgtagtattggacgtaattttggggccgctgtaattcat
ggagacaagtctcaaggcgagagagattgggtgctgaatcaattccggtctggaaagtcc
ccgattttagttgccactgatgttgctgcaaggggccttgacataaaagatataagggtt
gtgatcaattatgattttccaaatggggttgaggattatgtccaccgaattggaagaact
gggagagctggggccactggagtggcgtacacctttttctctgaccaggactggaagtat
gcaggtgatctggtaaaagttctggagggggctgaccagctggtgcctccagaagtacga
gagatggctttgcgtggtgggcccaattttggcagggatcggggtgggccgaaccgtttt
gaaactgctggtgttcgttgggattctggcggccatggtggcatgagggatggtggtttt
ggaggccgtagtggaatgagggatggcaagtttggtggccatggtggaatgagagacggc
aactttggtgtccgtggtggaatgagagatggcaactttggtggaatgagagagaatagt
tttggtggccgtggtggaatgagggatggtatttttggcggccgcggtggaatgagggat
ggtggctttggcgggcgcattggaatgagggaaggcagctttggtggccgtggaggcatg
agggatggcaactttggtggccgtggtggtggtcatgttggctgggataggaatgaacgg
gccccacatgatagatacaatgtggatgggcgtggacggggctatggcagggggtcagga
cggtttgataacagaagagatgttgcacaccggagtagaggtagaagttatagctcaagt
cctgaaagggttcgaacatggggctatagtagaagccgtagccgtagccgaagttggagt
cgaagccgaagccaaagccggagtcggagctggtctcgcagccgtagccccagctgtagt
cgtagtcgtagtcgcagtcgcagtcgtgacagacgtgaaagacctcgtaagacaaaattt
gatcagatggaaccctcaatgccggtatttgggcctcctgaggcaaggatgtctcctatg
tctccgggcacacaagccaatgcaatttctggagttgagcttcctggccagttaccaccg
gttgagaatgttgagccagaacatctagaggctgcggctgacacacacacaatttag
DBGET
integrated database retrieval system
