Camellia sinensis (tea plant): 114320158
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Entry
114320158 CDS
T07364
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114320158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114320158
03041 Spliceosome [BR:
csin03041
]
114320158
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114320158
Spliceosome [BR:
csin03041
]
Complex B
Other components
Prp19-related factors
114320158
Complex C
114320158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
UTP6_C
ARM_TT21_C
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
114320158
NCBI-ProteinID:
XP_028123085
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MSIPRELYPSDEDLLYEEELLRNPFSLKLWWRYLVARTESPFNKRAVIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYQTLNNTFERALVTMHKMPRIWIMYLITLTEQKLVTR
TRRTFDRALCALPVTQHDRIWDPYLVFVSQKGVPIETSLRVYRRYLKYDPAHIEDFIEFL
INSSLWQEASERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHAREVLGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEESEDEEDDGEEIADEDDDEDDRLDVAKLEKKLKRFWLGDDKDVDLRLARLEHLM
DRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLW
VAFAKLYENHKDIANARVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNFTGALELMRR
ATAEPSVEVKRRVAADGSEPVQIKLHKSLRLWTFYVDLEESLGTLESTRTVYERILDLRI
ATPQIIINYAMLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKLER
ARELFEHAVEVAPAESVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPPSEKLSMYEIY
IARAAEIFGVPKTREIYEQAIESGLPEKDVKTMCMKYADLEKSLGEIDRARGVFVYASQF
ADPRSDPDIWNKWNEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDNNPNL
DETMDALKKAGVPDDEMAALEKHLVPTANDTATTDGTRKVGFVSAGVETQTDGNHENIEL
PEESDSEDDGRVEIAEKIVPSAVFGSLVRKREEEGDNDGNGDDTAAVKDKDGDTRLGALE
RIKRQRRAG
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattcctcgcgaactctacccaagtgacgaggatctattgtacgaggaagaactt
cttcgcaaccccttcagcttgaagctatggtggcgctacctggtcgctcgaaccgaatca
cccttcaacaaacgagctgtgatctacgaacgagctctcaaagccctacctggaagctac
aaactctggtacgcttatcttcgcgaacgtctcgaactcgttcgaaatctccccatcaca
cactcacagtaccaaaccctaaacaacacattcgaaagagcactcgtaacaatgcacaaa
atgcctcgaatttggatcatgtacttgattactttaactgagcaaaagctcgtcactcgc
actcgacgcactttcgatcgggctctctgcgccttgccggtgacgcagcacgatcgaatt
tgggacccttatttggttttcgtgagccaaaagggtgtcccaattgagacttcacttagg
gtttatcggcggtatttgaagtatgaccctgctcacattgaagattttattgagtttttg
ataaattctagtctttggcaagaggcgtcagagagattagctggggttttgaatgatgac
cggttttattcaataaaaggaaaaacgaaacataggttgtggcttgagttgtgtgatttg
cttacgcagcatgccagggaggttttggggttgaacgtagatgcgattattaggggaggg
attaggaagtttacggatgaggttgggcggctttggacttcgcttgctgactattatatt
aggaggaatttagtggagaaagcaagggatatatttgaggaggggatgactacagttgta
actgttagggattttagtgtaatttttgatgcgtactctcagtttgaagagagcatgctt
gctctgaagatggaagaagaaagtgaggatgaggaagatgatggtgaagaaattgctgat
gaggatgatgatgaagatgaccgtttggatgtggcaaagcttgagaagaagcttaaaaga
ttttggttgggtgatgataaagatgttgatttgaggttggcgaggttggaacatctcatg
gataggaggcctgaactggctaacagtgtgcttcttcgccaaaacccacataatgtagaa
cagtggcatcggcgagtaaaactttttgagggtaatcccacaaagcaaattctgacatac
actgaggcagtgagaactgttgatcccatgaaagctgtggggaagcctcatacattgtgg
gttgcttttgccaagttgtatgagaatcacaaggatattgccaatgcaagagttattttt
gataaagcagtacaagtcaactacaaaaccgttgataatttggctagtgtttggtgtgaa
tgggctgaaatggagcttaggcacaagaactttacgggggctttggagttgatgcggcgt
gcgacagcagagccgtcagtggaggtcaaacgaagagtggctgctgatggcagcgaacca
gtgcagattaagcttcacaaatccctgaggctttggactttctatgttgatttagaggaa
agcctaggtaccttggagtcgactcgtacggtttatgaacggatattggatctaagaata
gccacgccacaaatcataattaactatgctatgcttttggaggaacacaaatactttgag
gatgccttcaaggtatatgaaagaggcgtgaagattttcaaatatccacatgtgaaggac
atatgggtcacttacctttccaagtttgttaaaagatatgggaaatcaaaattggaacgt
gcgagagagctgtttgagcatgccgttgaagtggcccctgctgaatctgtgaagccactg
tacctacaatatgctaaactagaggaggattatggtctagcaaagcgagcgatgaaggtt
tatgatcaagctacaaaggcagtcccaccctctgaaaaattgagcatgtatgagatctac
atagctcgtgctgccgagatatttggggttccaaaaacaagggaaatatatgagcaagca
atagaatctggtcttccagagaaagatgtgaagaccatgtgcatgaaatatgcagatctt
gagaagagccttggagaaatagatcgtgctcgtggagtttttgtgtatgcatctcagttt
gctgatccacgatcagatcctgatatctggaacaaatggaacgagtttgaggtgcagcat
ggaaatgaagacaccttccgagaaatgctacgtatcaaacggagtgtttctgcaagctat
agtcagacacatttcatccttcctgaatatttgatgcaaaaggataacaacccaaatctt
gacgaaaccatggacgcattgaaaaaagctggggttcctgatgatgaaatggctgcgcta
gagaagcatttagtgcctacagccaatgacactgctaccacagatggtacccgcaaagtg
ggttttgtgagtgctggagtggaaacccagacagacggaaatcacgagaatatcgaattg
cccgaggagagtgattcagaggatgacggaagagttgagattgcagaaaaaattgttcct
tcggccgtttttggtagtttggttcggaagcgggaagaggaaggtgataatgatggcaat
ggagacgacaccgctgctgtgaaagataaagatggtgatactcgtctcggtgccctggag
agaataaaaaggcaaaggagggccggatag
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