Camellia sinensis (tea plant): 114320946
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Entry
114320946 CDS
T07364
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114320946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114320946
03012 Translation factors [BR:
csin03012
]
114320946
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114320946
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114320946
Translation factors [BR:
csin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114320946
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
SUS_N
OB_NTP_bind
HA2_N
dsrm
Helicase_C
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
114320946
NCBI-ProteinID:
XP_028123844
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MNSKSNSRLGFLLAAACGKQSSLLHALFLSNQRRRFATARPDQDLFSFPALPTSNNAFPS
LSRIFSTFLFSGRRAFCGYAAEQFSDDEYECDYDNHKASSSVANIDEWNWKLNLLLHNEK
DQEIVSRDKRDRRDYEQISNLAKRMGLYCELYGKVVVASKVPLPNYRPDLDDKRPQREVV
IPLSLQRRVEGLLQEHLDRMQLSSERVSGTSVDTKATDQVEDVNPDDDPDSFLDGSVMEK
VLQRQSLRMRNMQRTWQESPEGRTMLDFRRSLPAFKEKERLLQAIAQNQVCELYGKVVVA
SKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMQLSSERVSGTSVDTKATD
QVEDVNPDDDPDSFLDGSVMEKVLQRQSLRMRNMQRTWQLLLINIVIMDSAPAQVQNAVD
FLKMIGALDENENLTHLGGFLSMLPVDPKLGKMLIMGAIFSCFDPILTIVAGLSVRDPFL
LPQDKKDFNSDSFLCLIVDRLQFLYSSQSYWECDFTEILDQDSQKLIFEKPPPNVRKIVL
ATNMAEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPG
ECYHLYPQCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGDFLSAALQPPESLAVQN
AVDFLKMIGALDENENLTHLGGFLSMLPVDPKLGKMLIMGAIFSCFDPILTIVAGLSVRD
PFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAERGGSAYEYCWRNFLSAQTL
QAIHSLRKQFSFILKGAGLLDADAGTNNRLSHNQSLVRAIICSGLFPGIASVVHRETSMS
FKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGNLN
HGVLVISFIAKCFLCLVLNEITLEGTSPVQINLASFNHHLQPHPLLEFLNAQQKLHDGPF
GEVLKSAQEAIVLPPWVALAIRLRPGVWEYIRVNINALVVEELSVPEYLHFKEELVEGPR
NGNFLGDNGIAMLQLQDPSLDIQKAGKYLMLAVQELVSGDQCEGRFVFGRESKKPKESSD
SDRFTRDGTNPKSLLQTLMMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQL
AERDAALEALAWLTQTSDKTNDEDDNSPPDVTDNMLKLLGKRRRSKRRSG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaactccaaatccaattcgaggctagggtttctcttagcagcagcatgtggcaaacaa
tcctcgcttcttcatgctctcttcttgtccaatcaaaggaggaggtttgcaactgctagg
ccagatcaggacttgttctcgtttcctgctcttcccacctccaataacgcctttccctct
ctctccagaattttctctacctttttattctcgggtcgccgagctttttgcggctacgcc
gctgagcagttctcagacgacgagtatgaatgcgactacgacaatcataaggcatcttct
tctgtggccaacattgatgagtggaattggaaacttaacttgctattacacaatgaaaag
gaccaggaaattgtgtccagagataaaagagataggagagactatgagcaaatatctaac
cttgccaaaaggatggggctttactgtgaattgtatggaaaagtggtggttgcgagcaag
gttcctcttcccaattataggccagatctcgatgacaagcggcctcaaagggaggtggtt
atcccactaagcttgcaaaggagagtagagggtctgctgcaggaacaccttgacagaatg
cagttgagttctgaaagggtcagtggcacttcagttgacactaaggccactgatcaggtt
gaagatgtaaatccagatgatgatcccgattctttcttagatggctctgttatggaaaag
gttcttcagaggcagagtttgcgaatgcgtaatatgcagagaacgtggcaggaatcacca
gaaggcaggacaatgctagactttcggagatctctgcctgcattcaaggagaaggaaagg
ctgctccaagcaattgcacaaaatcaggtttgtgaattgtatggaaaagtggtggttgcg
agcaaggttcctcttcccaattataggccagatctcgatgacaagcggcctcaaagggag
gtggttatcccactaagcttgcaaaggagagtagagggtctgctgcaggaacaccttgac
agaatgcagttgagttctgaaagggtcagtggcacttcagttgacactaaggccactgat
caggttgaagatgtaaatccagatgatgatcccgattctttcttagatggctctgttatg
gaaaaggttcttcagaggcagagtttgcgaatgcgtaatatgcagagaacgtggcagtta
ttattaataaatatagtgatcatggattctgcaccagctcaggtccaaaatgctgttgat
tttttgaagatgattggagcattggatgagaatgaaaatctcacacatcttggagggttt
ctgtcaatgctgccagtagatcccaagctagggaaaatgttaataatgggtgctatcttc
agttgctttgatcctattctgacaattgtggctggacttagtgtcagggatccttttctt
ttgcctcaagataaaaaagatttcaattcagattcttttctttgtttgattgttgatcgg
cttcagtttctttattcttcccagtcatattgggagtgtgatttcactgagattcttgac
caggattcacagaaactcatatttgagaagccgcctcctaatgttcgtaaaatagtactt
gctacaaatatggcagaggcaagtattacaattaatgatgttgtttttgtcattgattgt
ggaaaagcaaaggagactacttatgatgcattaaataatactccatgtcttctaccttca
tggatatcacaagcttctgctcggcaaagacgaggtagggctggccgcgtgcagccaggc
gagtgctaccatctatatccacaatgtgtttatgaagcgtttgctgaatatcaacttcct
gaacttctgagaactcctttgaattctctctgtttgcaaataaaaagtttgcaggtgggc
agcataggagactttttgtcagctgctctgcagccaccagaatcattggctgtccaaaat
gctgttgattttttgaagatgattggagcattggatgagaatgaaaatctcacacatctt
ggagggtttctgtcaatgctgccagtagatcccaagctagggaaaatgttaataatgggt
gctatcttcagttgctttgatcctattctgacaattgtggctggacttagtgtcagggat
ccttttcttttgcctcaagataaaaaagatttagcaggtacagcaaagtccagattttct
gcaaaggactatagtgatcatatggcacttgttcgtgcatatgaaggatggaaagatgca
gaaagaggaggatcagcatatgagtactgctggaggaatttcctttctgcccaaacactt
caagccatccattctcttcggaagcaatttagcttcattttgaaaggtgctggattgcta
gatgctgatgctggcactaacaatagattaagtcacaaccagtcattggttcgtgcaatt
atatgttctggcctctttcctggaatagcatctgtagtgcacagggagacatccatgtcc
ttcaaaacaatggatgatggccaggtcttgctttatgctaattcggtgaatgcacgttac
cagactattccgtacccatggctagtctttggtgaaaaagtgaaggtcaatactgttttc
atacgtgattctactggtgtttctgattctattctgatcctttttggtggtaatctcaac
catggagtcttggtaatttccttcattgccaaatgttttttgtgtttagttttgaatgaa
atcactcttgaaggcacaagccctgttcagatcaaccttgccagtttcaatcatcacctt
cagcctcacccactccttgaatttctcaatgcccaacaaaaactgcatgatggacccttc
ggagaggttctgaaatctgcccaggaagcaatagttttgcctccatgggttgctcttgct
attcggttgaggcccggtgtctgggaatacatccgagtgaatattaatgcccttgttgtt
gaggagttgagcgtcccggagtatcttcatttcaaagaagaacttgttgaaggacctcgc
aatggcaactttttgggtgataatggtattgcaatgttgcagctccaagatcctagcctc
gacatccagaaggcaggcaagtacctcatgctcgctgttcaggagctagtatcaggagac
caatgtgaagggaggtttgtatttggccgtgaaagcaagaagcccaaggagtctagtgac
agtgatagatttacaagagatggaacaaaccctaagagcttgctgcaaacactcatgatg
cgggcggggcactcccctccaaagtacaaaacaaagcatctcaagacaaatgaattcaga
gcgttggtagagtttaaaggaatgcaatttgtggggaagcccaagaaaaacaaacagctt
gcagagagggatgctgctttagaggcattagcttggttgactcagacctctgacaaaact
aatgatgaggatgataattccccacctgatgtcactgacaacatgttgaaactccttggt
aagcgcagaagatcaaagcggcgctcgggttga
DBGET
integrated database retrieval system
